PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009612762.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Protein Properties

Length: 491aa MW: 55379.5 Da PI: 6.4384

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009612762.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.9	1e-14	89	179	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++p +v+ +l +pkkf+ ++ ++k+ + t++l de+ +++ k+ ++k++ l++GW++F a+ L gD+++F+l++ +f +v XP_009612762.1 89 FVKYMLPTHVTGGFWLGFPKKFC-DYHLPKR-DDTVVLVDEDEQEYATKYLVDKTG----LSGGWRGFSIAHSLVHGDVLIFQLIQLCKF--KVY 175 8999*****************.6656664.55************888888....**********************998888..888 PP EE-S CS B3 96 vfrk 99 ++r+ XP_009612762.1 176 IIRE 179 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.22E-21	83	179	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	3.3E-18	83	180	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.43E-24	87	178	No hit	No description
PROSITE profile	PS50863	11.589	89	180	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.7E-13	89	179	IPR003340	B3 DNA binding domain
SMART	SM01019	4.8E-19	89	180	IPR003340	B3 DNA binding domain
Pfam	PF05266	9.5E-10	370	473	IPR007930	Protein of unknown function DUF724

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 491 aa Download sequence Send to blast
MAISAMYSSK KSPLLSSSKK KALEIKKKLL RKRALGPCNT YKGKNGDNKK VQIRPEKKVN 60 KPSTVDANSS AMLRAEEVQA NLPSQFPSFV KYMLPTHVTG GFWLGFPKKF CDYHLPKRDD 120 TVVLVDEDEQ EYATKYLVDK TGLSGGWRGF SIAHSLVHGD VLIFQLIQLC KFKVYIIRES 180 TLAELDGAIS LLNLDFHAKP IKSEICEAKE QKYLEPPVLD THQDDKQEID GAISLLKLDF 240 RARPIISDQD EEMKICEAKE EKYLEPSVID IDQDDQNVEA MLLKNSDQGP ASDQCGNNSD 300 NSSEVLGIRF SESRLEFKDM KVFSGFNILI DSLIIDSEIP AHIRTKYYEL CCTQKSFLHD 360 HLLGGLNCKL AAGMITETVN IADAIRASNI STSRDYLETW NSTLKGFECL GMEVGFLRAR 420 LNKLVSLSSE SQQILESKRN ELAEAKEEMR NLETKLLKVK QVIKNLDSEI ELTTKDTSFE 480 IKYKALAAVP W

Sequence ? help Back to Top

Protein Sequence Length: 491 aa Download sequence Send to blast

MAISAMYSSK KSPLLSSSKK KALEIKKKLL RKRALGPCNT YKGKNGDNKK VQIRPEKKVN  60
KPSTVDANSS AMLRAEEVQA NLPSQFPSFV KYMLPTHVTG GFWLGFPKKF CDYHLPKRDD  120
TVVLVDEDEQ EYATKYLVDK TGLSGGWRGF SIAHSLVHGD VLIFQLIQLC KFKVYIIRES  180
TLAELDGAIS LLNLDFHAKP IKSEICEAKE QKYLEPPVLD THQDDKQEID GAISLLKLDF  240
RARPIISDQD EEMKICEAKE EKYLEPSVID IDQDDQNVEA MLLKNSDQGP ASDQCGNNSD  300
NSSEVLGIRF SESRLEFKDM KVFSGFNILI DSLIIDSEIP AHIRTKYYEL CCTQKSFLHD  360
HLLGGLNCKL AAGMITETVN IADAIRASNI STSRDYLETW NSTLKGFECL GMEVGFLRAR  420
LNKLVSLSSE SQQILESKRN ELAEAKEEMR NLETKLLKVK QVIKNLDSEI ELTTKDTSFE  480
IKYKALAAVP W

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009612762.1	0.0	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBL	A0A1S4AG97	0.0	A0A1S4AG97_TOBAC; B3 domain-containing protein Os01g0234100-like
STRING	XP_009612762.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	8e-42	B3 family protein