PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009612451.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 425aa MW: 49429.1 Da PI: 7.9502 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.8 | 6.4e-16 | 16 | 95 | 9 | 99 |
HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +k+g l +pk f+ ++ +++++e+ t ++g++W vkl ++++ l++GW++F+++++L+ gD +vFk++g++ef v +f++ XP_009612451.1 16 PGFKQG-LKIPKGFL-KYlkDHDHNEH--AT-LRRDGKKWLVKL--NGRR----LEEGWEKFAEEHDLQLGDLLVFKHEGNMEF--EVIIFDS 95 455665.*******9.77564444444..44.347*********..8888....*************************99999..7777775 PP | |||||||
2 | B3 | 51.2 | 2.3e-16 | 138 | 219 | 4 | 88 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++s++l++g l++p +fa+++g+ + + +l+++de+ rsW++kl + ++++++ W +F an+Lk+gD ++F+++ + XP_009612451.1 138 CTVRSYYLTNGYLRVPSRFASKNGLTYK-KCDLIIRDERQRSWNLKL--YTSCHHVYIGGRWAKFHAANDLKVGDRIMFEVVTNG 219 5678*******************88754.459***************..999999*************************87643 PP | |||||||
3 | B3 | 47.4 | 3.4e-15 | 322 | 408 | 5 | 95 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++++ l+ + l+lp +fa ++g+++++ +l+++de+ rsW++ l r + ++ +++GW++F + + LkegD ++F+++ +++++v k XP_009612451.1 322 TIRPYCLTYSYLILPTQFALTNGLINKK-CDLIIRDEWQRSWNLML--RPFGTSVCIRGGWRNFRDTHCLKEGDQIMFEVVT-DGTKPVWK 408 56788999999***********988654.59***************..*******************************876.56656655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.3E-21 | 4 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.915 | 7 | 96 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-20 | 7 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.27E-18 | 8 | 94 | No hit | No description |
SMART | SM01019 | 7.3E-20 | 10 | 96 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-12 | 18 | 94 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-16 | 133 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.12E-17 | 134 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.787 | 135 | 229 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-9 | 136 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-14 | 139 | 221 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.00E-13 | 141 | 214 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.7E-16 | 315 | 409 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.26E-18 | 317 | 410 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.533 | 318 | 412 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.8E-13 | 319 | 413 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.0E-13 | 322 | 408 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.96E-13 | 333 | 406 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MKIPPVKPHF FKPIQPGFKQ GLKIPKGFLK YLKDHDHNEH ATLRRDGKKW LVKLNGRRLE 60 EGWEKFAEEH DLQLGDLLVF KHEGNMEFEV IIFDSSHCDR EYAEYLQEEE DIVEGECKKF 120 ELKEAATHNP FGQSHFECTV RSYYLTNGYL RVPSRFASKN GLTYKKCDLI IRDERQRSWN 180 LKLYTSCHHV YIGGRWAKFH AANDLKVGDR IMFEVVTNGE RPIWKFHVKP NLSIKSSSNA 240 FPYAEAATHK PFGHSHLDSR HCNREYVEYL QEEEEAASDA VEGTSKEFEL KDEPNPSVKS 300 SSKAFPHVEA AIHKPFGHFV CTIRPYCLTY SYLILPTQFA LTNGLINKKC DLIIRDEWQR 360 SWNLMLRPFG TSVCIRGGWR NFRDTHCLKE GDQIMFEVVT DGTKPVWKFH GKISGENSRI 420 NQGVD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009612446.1 | 0.0 | PREDICTED: B3 domain-containing protein REM5-like isoform X3 | ||||
TrEMBL | A0A1S4A8R5 | 0.0 | A0A1S4A8R5_TOBAC; B3 domain-containing protein REM5-like isoform X3 | ||||
STRING | XP_009612446.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 2e-40 | B3 family protein |