PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009612339.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 119aa    MW: 13501.4 Da    PI: 10.1145
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009612339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.82.8e-181656242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +ien+ nrqvtfsk rng++KKA+EL v+++aev +i+  +
  XP_009612339.1 16 KIENQNNRQVTFSKCRNGVFKKANELAVMTGAEVGIIVCPQ 56
                    79***********************************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.661767IPR002100Transcription factor, MADS-box
SMARTSM004322.6E-21766IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-22977IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-15929IPR002100Transcription factor, MADS-box
PfamPF003193.1E-201663IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-152944IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-154465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MSTRRITVRK SIRLAKIENQ NNRQVTFSKC RNGVFKKANE LAVMTGAEVG IIVCPQGSKP  60
YSFGHPNVNE TINKYVGEER PPSPSSPGID DEYVQMFRKA NSRELNNDSI LCKTNWFLH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009612339.12e-85PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU41e-18AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A1S4CZS51e-70A0A1S4CZS5_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009612339.18e-85(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-21AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]