PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009611243.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 305aa MW: 32728.5 Da PI: 7.9493

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009611243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	117.3	2e-36	22	132	10	105
TCP 10 kihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.............ka 90 ++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ + + s +ss++ s+++ ++ XP_009611243.1 22 DRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSsLNISLRSSGNISRHNylaqnlshgvglfSS 116 9**********************************************************997776666666666644444555555566666633 PP TCP 91 aksaa.kskksqksaa 105 ++s++ + +++ + + XP_009611243.1 117 ENSSMgLNIFPSGHVN 132 3333334444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	25.337	20	74	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-35	22	158	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MNLLLLKIFC WMLVCVCVGG GDRHTKVDGR GRRIRMPATC AARVFQLTKE LGHKSDGETI 60 EWLLQQAEPS VIAATGTGTI PANYSSLNIS LRSSGNISRH NYLAQNLSHG VGLFSSENSS 120 MGLNIFPSGH VNVNLNAMLQ AKQELCDGES NNNIGRKRRS ENQDLLPVLQ NYHMGNNYML 180 QSSNSGSIPA SYQGQIPATT LYMMTNNSSH DPNAMWTFPS TIGNSNIRGG SLTNSGLLNF 240 MNSHPSVFGQ HSGGGSGGGG TVVEGQMGML TGMNTLRQIG HASGSSNQHN GADDHGNNDH 300 HCHHP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149290	4e-76	AC149290.1 Solanum demissum chromosome 5 clone PGEC093P17, complete sequence.
GenBank	AC149301	4e-76	AC149301.1 Solanum demissum chromosome 5 clone PGEC517A09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009611243.1	0.0	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A1S4ABN5	0.0	A0A1S4ABN5_TOBAC; transcription factor TCP15-like
STRING	XP_009611243.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13947	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-42	TCP family protein