PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009610188.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 736aa    MW: 80052.1 Da    PI: 6.5487
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009610188.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.7e-33319376260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  XP_009610188.1 319 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSH-EGHITEIIYKGAHNHPK 376
                     8****************************************.***************85 PP
2WRKY104.17.4e-33533591159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k v++tYeg+Hnh+
  XP_009610188.1 533 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERASHDLKSVITTYEGKHNHD 591
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.3E-29316377IPR003657WRKY domain
SuperFamilySSF1182909.29E-26317377IPR003657WRKY domain
SMARTSM007749.0E-37318376IPR003657WRKY domain
PfamPF031063.0E-25319375IPR003657WRKY domain
PROSITE profilePS5081123.399319377IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.4E-37518593IPR003657WRKY domain
SuperFamilySSF1182901.44E-28525593IPR003657WRKY domain
PROSITE profilePS5081138.733528593IPR003657WRKY domain
SMARTSM007746.6E-38533592IPR003657WRKY domain
PfamPF031065.1E-25534591IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MLYVQCPQLM GGFDDHVAIM GDWMPPSPSP RSFFSSLLGD DIGSRSTFEF PNENQRGNLA  60
SEPQEHVGIS DGAQADATTV KSDQKMSSRG GLLERMAARA GFNAPKLNTE SLRPADLSQN  120
QGVRSPYLTI PPGLSPTSLL ESPVFLSNSL VQPSPTTGKF QFASGIESRN STFMMEDPDK  180
RKENALESIN SSSFSFKPVP ETAPSLFPGT TSRVNSSNIS QQCFPNIKVS VHSQNSLLSH  240
SVEATQMQTQ SEKGLHQSSD FPRFSAEKGV RDSNVTPESR NFQSVGSNME HSPPLDEPQD  300
EEIDQRVGGD PNVVGAPAED GYNWRKYGQK QVKGSEYPRS YYKCTHPNCP VKKKVERSHE  360
GHITEIIYKG AHNHPKPPPN RRSALGSTNS LGELQLDGAE QGVSGSNGDL GRANIQKAPD  420
AGGLDWRNNN LDVTSSAHLG SAYCNGSASF PVQNNTQLES GGAVDVSSTF SNDEDEDDRG  480
THGSVSQGYD GEGDESESKR RKLETYSTDM SGATRAIREP RVVVQTTSEV DILDDGYRWR  540
KYGQKVVKGN PNPRSYYKCT SAGCNVRKHV ERASHDLKSV ITTYEGKHNH DVPAARNSSH  600
VNSGASNTLP APVTAPPAQS HLHRPEPAQL QNAMARFDRQ PSLGSFGPTP GYSYGINQQG  660
LASLAMAGFH PNQSKSQQQI PVHSYLGQPR PMHDGGFMFP KEEPKAEPMS DPGLDLSNGS  720
SIYQQFMSRL PLGPQM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37319594878Probable WRKY transcription factor 4
2lex_A8e-37319594878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0635760.0AB063576.1 Nicotiana tabacum NtWRKY-9 mRNA for WRKY DNA-binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009610188.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
RefseqXP_016456274.10.0PREDICTED: probable WRKY transcription factor 2 isoform X2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A1S3YVU90.0A0A1S3YVU9_TOBAC; probable WRKY transcription factor 2 isoform X2
STRINGXP_009610187.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-177WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]