PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009609331.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 126aa MW: 14238.6 Da PI: 4.9407 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 33.4 | 8.8e-11 | 105 | 126 | 1 | 22 |
---SS-EEEEEEE--TT-SS-E CS WRKY 1 ldDgynWrKYGqKevkgsefpr 22 ldDgy+WrKYG+K+vk+s++pr XP_009609331.1 105 LDDGYKWRKYGKKMVKDSPNPR 126 59*******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-11 | 91 | 126 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.93E-9 | 98 | 126 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.724 | 100 | 126 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-6 | 106 | 126 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 126 aa Download sequence Send to blast |
MAANNPSANM SDGSFRSLDS PDSDFSNQLI NFELSDIFEL DNWPVHDDPT FVVSGPSQYS 60 GNEVVVTERS RSYHEGSSNN IGSSRERKEV KDKVAFKTLS QIEILDDGYK WRKYGKKMVK 120 DSPNPR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ871281 | 0.0 | AJ871281.1 Nicotiana tabacum mRNA for putative WRKY transcription factor 11. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009594857.1 | 2e-88 | PREDICTED: probable WRKY transcription factor 50 | ||||
Refseq | XP_009609331.1 | 8e-89 | PREDICTED: probable WRKY transcription factor 50 | ||||
Refseq | XP_009617031.1 | 8e-89 | PREDICTED: probable WRKY transcription factor 50 | ||||
Refseq | XP_016446996.1 | 2e-88 | PREDICTED: probable WRKY transcription factor 50 | ||||
Refseq | XP_016456538.1 | 2e-88 | PREDICTED: probable WRKY transcription factor 50 | ||||
TrEMBL | A0A1S3Y4C3 | 4e-87 | A0A1S3Y4C3_TOBAC; probable WRKY transcription factor 50 | ||||
TrEMBL | Q5ND89 | 4e-87 | Q5ND89_TOBAC; Putative WRKY transcription factor 11 | ||||
STRING | XP_009594857.1 | 6e-88 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009609331.1 | 3e-88 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009617031.1 | 3e-88 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2124 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26170.1 | 2e-15 | WRKY DNA-binding protein 50 |