PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009608534.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 325aa MW: 36192 Da PI: 10.0763

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009608534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.6	9.2e-32	254	311	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ XP_009608534.1 254 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPTMLIVTYEGEHNHS 311 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.2E-18	204	250	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	1.4E-33	240	311	IPR003657	WRKY domain
PROSITE profile	PS50811	31.054	247	313	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-27	249	311	IPR003657	WRKY domain
SMART	SM00774	2.7E-38	252	312	IPR003657	WRKY domain
Pfam	PF03106	2.8E-27	254	310	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MAVELMMDYG NTRNCTFVTK LEEKAVVQEA SSGLESVEKL IRLLSQTQSQ QIQHQKQGYL 60 KQNNSPMEIE TVANAAVTKF KKVISLLDRN RTGHARFRRA PVASSSSQNP TKDYVDTKVY 120 YPTPIQQIPL VSYENYSQQL PLVPKTISFS YSPEMSRTNS FNISTLTGET ESKQHSSSSA 180 FQITNLSQVS NSAGRPPLSS SSLKRKCSSS ENAVSGKCSG SSGRCHCSKR RKLRLKRVVR 240 VPAISMKMAD IPPDDYSWRK YGQKPIKGSP HPRGYYKCSS VRGCPARKHV ERALDDPTML 300 IVTYEGEHNH SLSVAETSSL ILESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	240	312	2	73	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ874393	0.0	KJ874393.1 Nicotiana tabacum putative WRKY transcription factor 7 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608534.1	0.0	PREDICTED: probable WRKY transcription factor 7
Refseq	XP_016498573.1	0.0	PREDICTED: probable WRKY transcription factor 7
Swissprot	Q9STX0	1e-95	WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBL	A0A1S4CBQ4	0.0	A0A1S4CBQ4_TOBAC; probable WRKY transcription factor 7
STRING	XP_009608534.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	4e-79	WRKY DNA-binding protein 15