PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608097.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 254aa    MW: 28551.8 Da    PI: 9.1736
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608097.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.62.8e-171050242
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    +i n+s r+ t+ kR++g++KK +ELS+LC+++++ ii+s+
  XP_009608097.1 10 FITNESARKATLKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
                    89**************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.895149IPR002100Transcription factor, MADS-box
SMARTSM004326.0E-19161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-22296IPR002100Transcription factor, MADS-box
CDDcd002661.89E-18286No hitNo description
PRINTSPR004045.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003197.3E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MTRSKVNLAF ITNESARKAT LKKRKKGLMK KVSELSTLCG IDACAIIYSP YDQDQPEVWP  60
SIMGAQRVLE EFKRMPEMEQ CKKMMNQESF IRQRIVKASE QLKKKQKENR KQEVIEVMYQ  120
CLTGKGLDNL ILTDLNDLGW LIDQNLKEIC KRIEALKKGA SASNSQLGVH AMESPQKRPF  180
TDWMNNPSDY QQIGLDAVNQ LIAEYVNDAL QAFVRGLPTV PPIPSPNNTA TVKIPRSGLA  240
NSGNGGTPNE SHDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608097.10.0PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-56AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1S3ZJU39e-95A0A1S3ZJU3_TOBAC; agamous-like MADS-box protein AGL80
STRINGXP_009608097.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-47AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]