PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009607852.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SBP | ||||||||
Protein Properties | Length: 308aa MW: 34959.4 Da PI: 8.5888 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 130.9 | 4.3e-41 | 177 | 254 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk+q+ XP_009607852.1 177 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKNQQ 254 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.2E-35 | 173 | 239 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.231 | 175 | 252 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-38 | 176 | 256 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.5E-31 | 178 | 251 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MLDYDWGEQS SVMLSGEEPN QENDQNHHQF FDPFANTSHQ TFTENPSLLN PQQHHFLNTS 60 HQQQNHQFFH PHLNNTSLYD PRCAYETTNY NTHHPPTQGS MPSLHQQPNT GFIMVPKSEP 120 QFMGGAPGVR DFASTSRIGL NLGGRTYFSS SEDDFVNRLY RRTRAVVEGG SVVNTPRCQA 180 EGCNADLTHA KHYHRRHKVC EFHSKAATVI AAGLTQRFCQ QCSRFHLLSE FDNGKRSCRK 240 RLADHNRRRR KNQQANIENS NKSQLDSTRN SSSDSLARSP PDSGAHSSSV TVAISPPRIS 300 LDCFRQRP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 178 | 251 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF439376 | 1e-174 | JF439376.1 Solanum chacoense squamosa promoter binding protein-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607851.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_009607852.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Refseq | XP_009607853.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 8 | ||||
Swissprot | Q8GXL3 | 2e-86 | SPL8_ARATH; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A1S3XCP5 | 0.0 | A0A1S3XCP5_TOBAC; squamosa promoter-binding-like protein 8 | ||||
STRING | XP_009607851.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 1e-85 | squamosa promoter binding protein-like 8 |
Publications ? help Back to Top | |||
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