PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009607736.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 283aa MW: 31294.9 Da PI: 4.7648

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009607736.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	55.4	1.3e-17	13	87	24	98
NF-YC 24 arikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 arikki++adedv +i+ +P l+ska elf+ +l r++ + ++ +t++ +++++++ ++fdfl d+v r XP_009607736.1 13 ARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLKKGAKTMNSFHLKQCIQSFNVFDFLKDVVSR 87 8***********************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	5.8E-16	12	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	9.2E-23	13	86	IPR009072	Histone-fold
SuperFamily	SSF47113	5.59E-19	19	88	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MITVSAPSYV LKARIKKIMQ ADEDVGKIAM AVPLLVSKAL ELFLQDLCDR TYEITLKKGA 60 KTMNSFHLKQ CIQSFNVFDF LKDVVSRVPD LGGSDGGAES ATKRRKIAEE DDHDSDDDIK 120 RSRMHETAHT SGSGRGRGRG RGRGRGRGAR ALERGDSNVH CDKLEDPADV PNQNNEKQKQ 180 NDERMDYVAE PADSKNISAG KCPEVPARNF DLNIDLNESV ESTAIPAEAP STSKMPPPEV 240 KHEEIPGWSL SEMEKMAIDP IQLANLNRGL DEEEEDYDEE GQG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	1e-18	13	73	15	75	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	146	RGRGRGRGRGR
2	138	147	RGRGRGRGRG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC244600	9e-34	AC244600.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-39b1 map 10, complete sequence.
GenBank	HG975450	9e-34	HG975450.1 Solanum pennellii chromosome ch11, complete genome.
GenBank	HG975523	9e-34	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018628198.1	0.0	PREDICTED: dr1-associated corepressor-like
TrEMBL	A0A1S3WZD0	0.0	A0A1S3WZD0_TOBAC; dr1-associated corepressor-like
STRING	XP_009607736.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7555	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	4e-54	NF-YC family protein