PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009607079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28621 Da PI: 4.8916 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.5e-21 | 106 | 156 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +grW+AeIrdp+ r kr++lg+++t+eeAa +++a+ kl+g XP_009607079.1 106 KKFRGVRQRQ-WGRWAAEIRDPT----RgKRVWLGTYDTPEEAAIVYDEAAVKLKG 156 59*****999.**********84....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 5.5E-90 | 10 | 252 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 2.35E-33 | 106 | 164 | No hit | No description |
SMART | SM00380 | 8.6E-38 | 107 | 170 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 107 | 165 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.868 | 107 | 164 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-13 | 107 | 156 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 107 | 164 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-9 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MIRNPVISPM DVPKTVKLSQ HIVTKNKHVP EQNDNSNFHS KFSQRVVRII LTDADATDSS 60 GDEGQDTVRR VKRHVTEINL MPSPNLIVCE KKRRLVSPDT DVTRRKKFRG VRQRQWGRWA 120 AEIRDPTRGK RVWLGTYDTP EEAAIVYDEA AVKLKGPDAV TNFPKVLTAD ITETESVTEG 180 GEKSENDVAL SPTSVLRNDD FTPFDDLGFC EVDAFGFDVD SLFRLPEFGM SEKYYGDEFG 240 EFDFDDFALE AR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 106 | 164 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 106 | 164 | 4 | 63 | ATERF1 |
3gcc_A | 1e-19 | 106 | 164 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 106 | KRRLVSPDTDVTRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF058827 | 0.0 | AF058827.1 Nicotiana tabacum TSI1 (Tsi1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009607079.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Refseq | XP_016468771.1 | 0.0 | PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like | ||||
Swissprot | O04682 | 1e-116 | PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6 | ||||
TrEMBL | A0A1S3ZWU7 | 0.0 | A0A1S3ZWU7_TOBAC; pathogenesis-related genes transcriptional activator PTI6-like | ||||
STRING | XP_009607079.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5227 | 21 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 6e-39 | cytokinin response factor 4 |