PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009606952.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 446aa MW: 48206.6 Da PI: 6.9627 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 222 | 271 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g XP_009606952.1 222 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 271 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.712 | 222 | 279 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-37 | 222 | 285 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 222 | 280 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.3E-33 | 222 | 280 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.0E-14 | 222 | 271 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 223 | 234 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.02E-15 | 230 | 281 | No hit | No description |
PRINTS | PR00367 | 1.3E-11 | 245 | 261 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MCLLKVANPR KSSEYVRFTD TGDSETTTTT AAEGGAQPYG QSDQCFEEMI QQQIQQEADY 60 LLSTSSAMPM FTGYSQTREM SAMVTALTHV VSGSNYRPDI SGSVTTSFGG GGSGIYSANS 120 PSSAYSSTSS GSRAGQKRSR DQEESVTQIL EQSHQGVYGG FGEFRGGLPS SSVKAEATSM 180 VAPTISTITT VPAFTTTTTT AEIATTAAGG TSEETGGERR RRYRGVRQRP WGKWAAEIRD 240 PHKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE NVRLLPQIQA SQPTTRLAIS 300 SSSTSASQFS FMAPISQPTP FFQPPHHHQQ PIQSSDMTRD YWEYSQLLQN PADFFDQQQP 360 SSLVEQMFFA SSRAVLHSNT TSSLGNSAAS STSSPSYPLL FSGQQSSYYR PQTNQNQGTS 420 SSSSSNSSNF SAPFWSSSSH YPPSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-23 | 221 | 282 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 222 | ERRRRY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 5e-55 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606952.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X2 | ||||
TrEMBL | A0A314KM12 | 0.0 | A0A314KM12_NICAT; Ethylene-responsive transcription factor abr1 | ||||
STRING | XP_009606951.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64750.1 | 5e-16 | ERF family protein |