PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606945.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 233aa    MW: 25563.1 Da    PI: 8.1907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606945.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.6e-2098148255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ taeeAa a+++a+ +++g
  XP_009606945.1  98 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYETAEEAALAYDKAAYRMRG 148
                     7********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-3297157IPR001471AP2/ERF domain
PfamPF008471.6E-1498148IPR001471AP2/ERF domain
PROSITE profilePS5103224.36898156IPR001471AP2/ERF domain
CDDcd000183.79E-3198157No hitNo description
SMARTSM003806.6E-3798162IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2398158IPR016177DNA-binding domain
PRINTSPR003675.0E-1199110IPR001471AP2/ERF domain
PRINTSPR003675.0E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MYQPISTELP PTSFSSLMPC LTDTWGDLPL KVDDSEDMVI YGLLSDALTA GWTPFNLTST  60
EIKAEPREEI EPATIPVPSV APPAETTTAQ AVVPKGRHYR GVRQRPWGKF AAEIRDPAKN  120
GARVWLGTYE TAEEAALAYD KAAYRMRGSK ALLNFPHRIG LNEPEPVRLT AKRRSPEPAS  180
SSISSALENG SPKRRRKAVA AKKAELEVQS RSNAMQVGCQ MEQFPVGEQL LVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3795163270ATERF1
3gcc_A1e-3795163270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8281540.0AB828154.1 Nicotiana tabacum ERF32 mRNA for ethylene response factor 32, complete cds.
GenBankTOBBY4D0.0D38126.1 Nicotiana tabacum EREBP-2 mRNA for ethylene-responsive element binding protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311965.11e-171ethylene-responsive transcription factor 2
RefseqXP_009606945.11e-171PREDICTED: ethylene-responsive transcription factor 2
SwissprotQ404791e-172ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLS0BDM51e-170S0BDM5_TOBAC; Ethylene response factor 32
STRINGXP_009606945.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-52ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]