PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009606902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 615aa MW: 67727.1 Da PI: 7.5375 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.4 | 2e-30 | 244 | 301 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +DgynWrKYGqK v+g+ef+rsYY+Ct+++C +kk+vers+ d+++++++Y g+H+h+k XP_009606902.1 244 EDGYNWRKYGQKLVRGNEFTRSYYKCTYPNCLAKKQVERSH-DGHITDVHYIGKHEHPK 301 8****************************************.***************85 PP | |||||||
2 | WRKY | 103.2 | 1.4e-32 | 420 | 478 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpk+v++tYeg+H+h+ XP_009606902.1 420 VNDGHRWRKYGQKYVKGNPNPRSYYRCSIAGCPVKKHVERASHDPKMVVTTYEGQHDHN 478 58********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 21.436 | 238 | 302 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.2E-26 | 240 | 301 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-24 | 240 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.3E-34 | 243 | 301 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-23 | 244 | 300 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 8.2E-34 | 406 | 478 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-28 | 412 | 479 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.66 | 415 | 480 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-37 | 420 | 479 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.9E-25 | 421 | 477 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 615 aa Download sequence Send to blast |
MTVVYGPSCT LISPRVPASS RRHRIMGTPR EEATNEVSSE NLQRKPDPDP ATNNPELKEK 60 GRCEPISADV VSGELQKRLS PAADAQASKS NQEETTHPST CQDVSSNVSQ SNQEDISLSK 120 EQQYQSENVR QKQGLKSEGD ASVCSQLSIL PKVSDAKSCG SESGVIEKVV SPLSGKSSDS 180 SDQIQSQSME VVVSQSDHQR VTYPIRPEKT LDKLQPRRNP DTSGHGLPSD RGMTLFRLPE 240 KPLEDGYNWR KYGQKLVRGN EFTRSYYKCT YPNCLAKKQV ERSHDGHITD VHYIGKHEHP 300 KTPSGPQTSP GLVAPLQMRQ PDIPVLTTSE EAEGEKSTTR ETCESSKPSE APLALDIVSA 360 GAGMQVTPLK PHKLENEVDK NSGPDSKRQK KDIAKDDTPP IKSHSEPRHI VQTMSEVDIV 420 NDGHRWRKYG QKYVKGNPNP RSYYRCSIAG CPVKKHVERA SHDPKMVVTT YEGQHDHNMS 480 WFRTLSQITA APDLSLTGIS GESRLESGET KHIGESISEL GENKHVGKSR IESGENKHVG 540 ESRIESGETK RVGQSISESG ETKHVRASIS ESGETKHVGE SRIESGKNKH VGQSRSESGE 600 NKHVNLDMVV HIGAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-31 | 234 | 479 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF096298 | 0.0 | AF096298.1 Nicotiana tabacum DNA-binding protein 1 (WRKY1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606902.1 | 0.0 | PREDICTED: probable WRKY transcription factor 33 isoform X2 | ||||
TrEMBL | A0A1S4B636 | 0.0 | A0A1S4B636_TOBAC; probable WRKY transcription factor 20 isoform X1 | ||||
STRING | XP_009606902.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4558 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 5e-71 | WRKY family protein |