PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009606019.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 291aa MW: 31233.7 Da PI: 9.1126

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009606019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	57	115	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++++cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk++ XP_009606019.1 57 SENIRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNT 115 57899***************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.1E-32	59	114	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.264	60	114	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-25	60	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MIQELFAGNT TLIGGGGENI SKQSNTPSTS PLSSTSNSST LTTNIPPPAN ASSSSNSENI 60 RCPRCDSPNT KFCYYNNYNL TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKNTNISTT 120 SAAKSTAAKL KASLPSFLGG LENEISNSNP FLFSSPQNHP LISLLRGNHQ NLNFNANTCH 180 FPNSVVKEEG KSIGVNSYNQ LPNSNGLCSN MWKNGFIAGE VQSTGLQELY QRLKASTSRC 240 YPDHAPSLLG NTASSSSMIL ESAPVAGGEL GFWNPSISTW SDLQTANGAY F

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226517	3e-64	AC226517.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J19, complete sequence.
GenBank	AC232774	3e-64	AC232774.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0056J10, complete sequence.
GenBank	HG975441	3e-64	HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBank	HG975514	3e-64	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606019.1	0.0	PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBL	A0A1S3Z5G6	0.0	A0A1S3Z5G6_TOBAC; dof zinc finger protein DOF2.4-like
STRING	XP_009606019.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	7e-33	DOF zinc finger protein 1