PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009606014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 474aa MW: 52787.2 Da PI: 6.41 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 147 | 196 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g XP_009606014.1 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.7 | 2.9e-13 | 239 | 288 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k XP_009606014.1 239 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCS 288 89********.7******5553..2.26**********99**********9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-16 | 147 | 205 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 8.52E-12 | 147 | 206 | No hit | No description |
Pfam | PF00847 | 2.2E-9 | 147 | 196 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-30 | 148 | 210 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.82 | 148 | 204 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.0E-17 | 148 | 204 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-17 | 239 | 299 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.52E-24 | 239 | 299 | No hit | No description |
Pfam | PF00847 | 8.7E-9 | 239 | 288 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-31 | 240 | 303 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.369 | 240 | 297 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.4E-16 | 240 | 298 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-6 | 241 | 252 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.2E-6 | 279 | 299 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 474 aa Download sequence Send to blast |
MFDLNLGFEE FAMDDDTVHL SYETTTSEKL QELQMENSGT SNSSIVNIET SSTAGDDEFF 60 SCSDDRRRND GYAFDILKGN DYEESEFVTK ELFPLTGGEA ATELLSRQQW LDLSANYGGP 120 AEQRIVVIPQ QRQQVKKSRR GPRSKSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA 180 HAAARAYDRA AIKFRGLDAD INFNVADYHD DLKQMSNFTK EEFVHILRRQ STGFSRGSSK 240 YRGVTLHKCG RWEARMGQFL GKKYIYLGLF DSEIEAARAY DKAAIKCSGR EAVTNFELST 300 YEGELSAEDN GGASHNLDLN LGIASSSQAD EQHGNTCQMG NTEFLLASNG LTEYRGAMRS 360 PSTTMGSKLP HGRQPLTDRP LLWNGVNTSV FPTFKGTAIG KGMEVDSSPN WTRQDQHPYG 420 GSPSMPLFST AASSGFANST SAAAHQHHFS TGPLPYHHSP SLANMNFAHY YCRS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF132002 | 0.0 | AF132002.1 Petunia x hybrida PHAP2B protein (Ap2B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009606014.1 | 0.0 | PREDICTED: floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | Q8H443 | 1e-103 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | A0A1S4B0R2 | 0.0 | A0A1S4B0R2_TOBAC; floral homeotic protein APETALA 2-like isoform X1 | ||||
STRING | XP_009606014.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-106 | related to AP2.7 |
Publications ? help Back to Top | |||
---|---|---|---|
|