PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009605279.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 465aa MW: 50319.8 Da PI: 4.266

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009605279.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	38.9	1.4e-12	376	400	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YP GA++V+C++C+tV XP_009605279.1 376 CGSCRQLLTYPQGAKLVKCSCCQTV 400 ************************9 PP
2	zf-LSD1	44.1	3.3e-14	414	438	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC +lL+YP+GApsVRC++C ++ XP_009605279.1 414 CGGCAVLLMYPYGAPSVRCSSCRHM 438 **********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	8.0E-16	373	403	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-10	376	400	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	8.2E-10	411	439	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.1E-11	414	437	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MEENLNKIEE EDEGPPPGFD SLALPSQHTT NDETDEDEGP PPGWPSNPQQ QNQQLLLTTD 60 VGMGSKEHES EDDEDGPPPG WNTVIPQKDL PSTLPPAAVT CDVEMEKKEE VVEDENNSPP 120 PGWELIPPLQ PLQTSTPPSG TQQALLADIE MEQKEVNEDD GPPPGWELAP QLQPLQTSTP 180 PSGMQQALLA EMEKKEEVDE DNGPPPGWEL TPQSQPLQTS TPPSGTQQAL LAEMEKKEEV 240 VKDEDNGPPP GLQLISQSQP LQTSTPPSGT QQTLLADVEM GSKQHSAVEK EGHPLGSESI 300 PMTGHSSPPT PPPQSSSSVA SSEMEMGSKQ EGTKNEEVRP PIEKQPTSHL PRIKPTAPQS 360 SSHATTFSAE MGQMVCGSCR QLLTYPQGAK LVKCSCCQTV NFVLEAHEVG QVKCGGCAVL 420 LMYPYGAPSV RCSSCRHMTK IGAHNRRPPL SVQQARRRHP AYQVH

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MEENLNKIEE EDEGPPPGFD SLALPSQHTT NDETDEDEGP PPGWPSNPQQ QNQQLLLTTD  60
VGMGSKEHES EDDEDGPPPG WNTVIPQKDL PSTLPPAAVT CDVEMEKKEE VVEDENNSPP  120
PGWELIPPLQ PLQTSTPPSG TQQALLADIE MEQKEVNEDD GPPPGWELAP QLQPLQTSTP  180
PSGMQQALLA EMEKKEEVDE DNGPPPGWEL TPQSQPLQTS TPPSGTQQAL LAEMEKKEEV  240
VKDEDNGPPP GLQLISQSQP LQTSTPPSGT QQTLLADVEM GSKQHSAVEK EGHPLGSESI  300
PMTGHSSPPT PPPQSSSSVA SSEMEMGSKQ EGTKNEEVRP PIEKQPTSHL PRIKPTAPQS  360
SSHATTFSAE MGQMVCGSCR QLLTYPQGAK LVKCSCCQTV NFVLEAHEVG QVKCGGCAVL  420
LMYPYGAPSV RCSSCRHMTK IGAHNRRPPL SVQQARRRHP AYQVH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	2e-45	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018627526.1	0.0	PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X2
Refseq	XP_018627527.1	0.0	PREDICTED: proline-rich receptor-like protein kinase PERK10 isoform X3
TrEMBL	A0A1S4CG98	0.0	A0A1S4CG98_TOBAC; pollen-specific leucine-rich repeat extensin-like protein 2 isoform X1
STRING	XP_009605279.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11642	22	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-35	lsd one like 2