PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009604711.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 245aa MW: 29025.9 Da PI: 10.1012 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 23 | 63 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed ll+++++++G g+W+++ar g++R +k+c++rw +yl XP_009604711.1 23 EDRLLIEYINLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 63 9**************************************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 69 | 113 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T+ E+++++++++ +G++ W+tIar ++ gRt++++k++w+++ XP_009604711.1 69 RGQITPYEEKIILELHAIWGNR-WSTIARGLP-GRTDNEIKNYWRTH 113 6788999***************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.417 | 12 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-9 | 16 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.84E-25 | 16 | 110 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 22 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.96E-8 | 23 | 63 | No hit | No description |
Pfam | PF00249 | 3.2E-12 | 23 | 63 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.799 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-13 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-13 | 69 | 113 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-24 | 71 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.99E-9 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MGEQMGNWRV IEEEWRKGPW IAEDRLLIEY INLHGEGRWN SVARLAGLKR NGKSCRLRWV 60 NYLRPDLKRG QITPYEEKII LELHAIWGNR WSTIARGLPG RTDNEIKNYW RTHFKKKVKK 120 SSTDKAEKTK ARLLKRQQFQ QQQQQQQLNN QNDMKRLASL FEEKENNRVP NLYSQGKQEM 180 AFLYQNTANQ EQGGGFFYST KASSKYEDII WDYGLWNLDD FNANLKIGAY YNSLPCMQTL 240 ATPFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-24 | 9 | 118 | 19 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009604711.1 | 0.0 | PREDICTED: myb-related protein MYBAS2-like | ||||
TrEMBL | A0A1S4BB37 | 1e-162 | A0A1S4BB37_TOBAC; myb-related protein MYBAS1-like isoform X1 | ||||
STRING | XP_009604711.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 1e-66 | myb domain protein 305 |