PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604630.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 361aa    MW: 40728.9 Da    PI: 5.7992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY919.2e-29134194259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs++dp+v+eitY+g+H+++
  XP_009604630.1 134 DDGYSWRKYGQKDILGAKYPRSYYRCTYRhmqNCWTTKQVQRSDDDPTVFEITYKGSHTCH 194
                     8**************************99899***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.4E-28123195IPR003657WRKY domain
SuperFamilySSF1182905.23E-25132195IPR003657WRKY domain
SMARTSM007747.4E-39133195IPR003657WRKY domain
PROSITE profilePS5081121.184134191IPR003657WRKY domain
PfamPF031065.7E-26134194IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDCAFNWEYS TLINELTQGI EHTKQLRAYL SSMASTTSEN QELLLQKILS SIEQSLLILK  60
CSGSSIQSPQ PVLQTCGAIE SSVSVDGSPR SEDKKRSFKD HQEVINISKK RKSQPTWTEQ  120
VKVSAQTGFE GPTDDGYSWR KYGQKDILGA KYPRSYYRCT YRHMQNCWTT KQVQRSDDDP  180
TVFEITYKGS HTCHQATNSA LQPKSPENQE FKKQANYQTG QYSNQVLMNL RANLRVDTND  240
LDKNETAACS FSFPPTFSGL TDENRHFQIS HVDENLMIGG GYSPSFVSPT TPESNYFSIS  300
SSCQMNGFGM VHNGHRSESD LTDIFSANTS STSSPILDGE FSLDHFELDP NFPFDNPRYF  360
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-19134193968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193111KKRSFKDHQEVINISKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604630.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S3YNH60.0A0A1S3YNH6_TOBAC; probable WRKY transcription factor 41
STRINGXP_009604630.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18432467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.24e-64WRKY family protein