PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009604199.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 348aa MW: 37752.8 Da PI: 8.356

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009604199.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.1e-39	57	175	2	105
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+++++tgt++++a+ + + s +ss++ s+++ XP_009604199.1 57 QPKRTSTKDRHTKVDGRGRRIRMPATCAARVFQLTKELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANYSsLNISLRSSGNISRHNylaqnls 151 689****************************************************************9977766666666666444445555555 PP TCP 89 ......kaaksaa.kskksqksaa 105 ++++s++ + +++ + + XP_009604199.1 152 hgvglfSSENSSMgLNIFPSGHVN 175 566666333333334444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.1E-37	61	201	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.583	63	117	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MIMETGHDNY GNSMQRPNFP LQLLEKREDP ICSTSVYPYP SPSADQKSNQ EPNKKPQPKR 60 TSTKDRHTKV DGRGRRIRMP ATCAARVFQL TKELGHKSDG ETIEWLLQQA EPSVIAATGT 120 GTIPANYSSL NISLRSSGNI SRHNYLAQNL SHGVGLFSSE NSSMGLNIFP SGHVNVNLNA 180 MLQAKQELCD GESNNNIGRK RRSENQDLLP VLQNYHMGNN YMLQSSNSGS IPASYQGQIP 240 ATTLYMMTNN SSHDPNAMWT FPSTIGNSNI RGGSLTNSGL LNFMNSHPSV FGQHSGGGSG 300 GGGTVVEGQM GMLTGMNTLR QIGHASGSSN QHNGADDHGN NDHHCHHP

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MIMETGHDNY GNSMQRPNFP LQLLEKREDP ICSTSVYPYP SPSADQKSNQ EPNKKPQPKR  60
TSTKDRHTKV DGRGRRIRMP ATCAARVFQL TKELGHKSDG ETIEWLLQQA EPSVIAATGT  120
GTIPANYSSL NISLRSSGNI SRHNYLAQNL SHGVGLFSSE NSSMGLNIFP SGHVNVNLNA  180
MLQAKQELCD GESNNNIGRK RRSENQDLLP VLQNYHMGNN YMLQSSNSGS IPASYQGQIP  240
ATTLYMMTNN SSHDPNAMWT FPSTIGNSNI RGGSLTNSGL LNFMNSHPSV FGQHSGGGSG  300
GGGTVVEGQM GMLTGMNTLR QIGHASGSSN QHNGADDHGN NDHHCHHP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149290	3e-80	AC149290.1 Solanum demissum chromosome 5 clone PGEC093P17, complete sequence.
GenBank	AC149301	3e-80	AC149301.1 Solanum demissum chromosome 5 clone PGEC517A09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604199.1	0.0	PREDICTED: transcription factor TCP15-like
Refseq	XP_016474072.1	0.0	PREDICTED: transcription factor TCP15-like
TrEMBL	A0A1S4ABN5	0.0	A0A1S4ABN5_TOBAC; transcription factor TCP15-like
STRING	XP_009604199.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13947	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	6e-52	TCP family protein