PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009604113.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 328aa MW: 37008.7 Da PI: 7.308

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009604113.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.6	2.5e-16	23	103	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt qe+++Liea++ ++er +r++ + +W++v +++++ + rs++qC++kw+nl +++kk++e e++++++ XP_009604113.1 23 WTVQETMVLIEAKKMDDERRNRRQgdinergkPTELRWKWVEDYCWRNSCLRSQNQCNDKWDNLMRDFKKVREYERREAKK 103 ************999999975333334433999**************************************997544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.097	15	87	IPR017877	Myb-like domain
Pfam	PF13837	5.6E-12	22	102	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDNILVGDQG GSSMLRDYRK GNWTVQETMV LIEAKKMDDE RRNRRQGDIN ERGKPTELRW 60 KWVEDYCWRN SCLRSQNQCN DKWDNLMRDF KKVREYERRE AKKAAEVGEE ITSYWKIEKN 120 ERKEKSLPTN MLPEIYEALV EIVDRKGQKM LPASLLPTLQ QQSTQPQITA LPLPPPPLPP 180 PTTAVVAQTA APQLSDVAYT GQYPFPTTCD CSDPDTSDLH SDSPAKKRRM SGEGTSSGTA 240 KGNINNSSQE VGSAISKSAV IIAEAIQSCE EREEKRHREL LSLHERRLKI EESKAEINRE 300 GINGLVDSIN KLANSILALA GNKNQSAP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604113.1	0.0	PREDICTED: uncharacterized protein LOC104098959 isoform X1
TrEMBL	A0A1S3XZW3	0.0	A0A1S3XZW3_TOBAC; uncharacterized protein LOC107770676
STRING	XP_009604113.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-50	Trihelix family protein