PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009603794.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HB-other

Protein Properties

Length: 499aa MW: 56175.6 Da PI: 8.3157

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009603794.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.7	2e-18	27	77	7	57
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ q+e Le+++++++yp+++++ eLA++lgLte+qV+ WF+ rR k+k+ XP_009603794.1 27 KTRAQIEGLEKFYKEHKYPTESMKSELAQSLGLTEKQVSGWFCHRRLKDKR 77 6899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.2E-20	9	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.03E-16	11	77	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.617	18	78	IPR001356	Homeobox domain
SMART	SM00389	8.7E-19	20	82	IPR001356	Homeobox domain
CDD	cd00086	5.72E-16	22	77	No hit	No description
Pfam	PF00046	5.7E-16	26	77	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence Send to blast
MEDPVVMHSE DDKGHTEKNK TRIKVIKTRA QIEGLEKFYK EHKYPTESMK SELAQSLGLT 60 EKQVSGWFCH RRLKDKRLLS REAYANGRQD RSSGVIQDRG SGFKQDSCGS TKQGDDKNFD 120 HREVESRRLT AREVSAADVT YEVGTQYRTE SNLMEDTPSR SSSSLRDACF SQNVESFDMA 180 TSRYLSCNVP TDLKSVKPRT GPSGYLKVKG QVENAAITAV KRQLGSLYRQ DGPPLGVEFD 240 PLPPGAFESS VQNLVDKPEY AGEPVPALAP DFSKVYKQSN SCIGYGSISK TNSHVPDLEG 300 ASFKKSLKSA HPEYYFNQKP GQNSSIHDGD CYYLGRDSSI DMYKGSGREV VLDGRCNYKY 360 MAKHDGAEIR TGTSSSNGFR SPRTGQVNGE QVKPRFTSCN EMNLKIMEEE DLECKPSNFV 420 LKGSKHRYCP DRALSSKVEK DYIHVDRPAV DENYNLDRVK IPWENEMRAA KRARDESPNH 480 QEYPRKASVT QCDPRQIIG

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence Send to blast

MEDPVVMHSE DDKGHTEKNK TRIKVIKTRA QIEGLEKFYK EHKYPTESMK SELAQSLGLT  60
EKQVSGWFCH RRLKDKRLLS REAYANGRQD RSSGVIQDRG SGFKQDSCGS TKQGDDKNFD  120
HREVESRRLT AREVSAADVT YEVGTQYRTE SNLMEDTPSR SSSSLRDACF SQNVESFDMA  180
TSRYLSCNVP TDLKSVKPRT GPSGYLKVKG QVENAAITAV KRQLGSLYRQ DGPPLGVEFD  240
PLPPGAFESS VQNLVDKPEY AGEPVPALAP DFSKVYKQSN SCIGYGSISK TNSHVPDLEG  300
ASFKKSLKSA HPEYYFNQKP GQNSSIHDGD CYYLGRDSSI DMYKGSGREV VLDGRCNYKY  360
MAKHDGAEIR TGTSSSNGFR SPRTGQVNGE QVKPRFTSCN EMNLKIMEEE DLECKPSNFV  420
LKGSKHRYCP DRALSSKVEK DYIHVDRPAV DENYNLDRVK IPWENEMRAA KRARDESPNH  480
QEYPRKASVT QCDPRQIIG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975451	0.0	HG975451.1 Solanum pennellii chromosome ch12, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009603793.1	0.0	PREDICTED: uncharacterized protein LOC104098696
Refseq	XP_009603794.1	0.0	PREDICTED: uncharacterized protein LOC104098696
Refseq	XP_018627140.1	0.0	PREDICTED: uncharacterized protein LOC104098696
TrEMBL	A0A1S4AJ08	0.0	A0A1S4AJ08_TOBAC; uncharacterized protein LOC107798231
STRING	XP_009603793.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	9e-70	HB-other family protein