PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009603793.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | HB-other | ||||||||
Protein Properties | Length: 499aa MW: 56175.6 Da PI: 8.3157 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.7 | 2e-18 | 27 | 77 | 7 | 57 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ q+e Le+++++++yp+++++ eLA++lgLte+qV+ WF+ rR k+k+ XP_009603793.1 27 KTRAQIEGLEKFYKEHKYPTESMKSELAQSLGLTEKQVSGWFCHRRLKDKR 77 6899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-20 | 9 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-16 | 11 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.7E-19 | 20 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.72E-16 | 22 | 77 | No hit | No description |
Pfam | PF00046 | 5.7E-16 | 26 | 77 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MEDPVVMHSE DDKGHTEKNK TRIKVIKTRA QIEGLEKFYK EHKYPTESMK SELAQSLGLT 60 EKQVSGWFCH RRLKDKRLLS REAYANGRQD RSSGVIQDRG SGFKQDSCGS TKQGDDKNFD 120 HREVESRRLT AREVSAADVT YEVGTQYRTE SNLMEDTPSR SSSSLRDACF SQNVESFDMA 180 TSRYLSCNVP TDLKSVKPRT GPSGYLKVKG QVENAAITAV KRQLGSLYRQ DGPPLGVEFD 240 PLPPGAFESS VQNLVDKPEY AGEPVPALAP DFSKVYKQSN SCIGYGSISK TNSHVPDLEG 300 ASFKKSLKSA HPEYYFNQKP GQNSSIHDGD CYYLGRDSSI DMYKGSGREV VLDGRCNYKY 360 MAKHDGAEIR TGTSSSNGFR SPRTGQVNGE QVKPRFTSCN EMNLKIMEEE DLECKPSNFV 420 LKGSKHRYCP DRALSSKVEK DYIHVDRPAV DENYNLDRVK IPWENEMRAA KRARDESPNH 480 QEYPRKASVT QCDPRQIIG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975451 | 0.0 | HG975451.1 Solanum pennellii chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603793.1 | 0.0 | PREDICTED: uncharacterized protein LOC104098696 | ||||
Refseq | XP_009603794.1 | 0.0 | PREDICTED: uncharacterized protein LOC104098696 | ||||
Refseq | XP_018627140.1 | 0.0 | PREDICTED: uncharacterized protein LOC104098696 | ||||
TrEMBL | A0A1S4AJ08 | 0.0 | A0A1S4AJ08_TOBAC; uncharacterized protein LOC107798231 | ||||
STRING | XP_009603793.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3436 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 9e-70 | HB-other family protein |