PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_009603478.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 144aa MW: 16162.6 Da PI: 8.7057 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 57.2 | 2.1e-18 | 11 | 59 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i ++ r vtfskRr+g++KKA EL +++a+va i+fs+tgk y+y XP_009603478.1 11 KQIMKETSRMVTFSKRRKGLFKKALELESMTGARVAAIVFSPTGKPYTY 59 5788899*****************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.6E-23 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.586 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.29E-21 | 4 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-22 | 13 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-16 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MGTGKKKIEI KQIMKETSRM VTFSKRRKGL FKKALELESM TGARVAAIVF SPTGKPYTYG 60 DVYSAIDRHF STSIDPFSGS GDVCISGSRS TPPSRNGLRN WLENIDVQEC ENLNELLLLK 120 EQLEGTREKL AFIEDSESFL ALFM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009603478.1 | 1e-103 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | A0A1S4D6G0 | 1e-100 | A0A1S4D6G0_TOBAC; agamous-like MADS-box protein AGL29 | ||||
STRING | XP_009603478.1 | 1e-103 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17310.1 | 4e-14 | M-type_MADS family protein |