PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603184.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 409aa    MW: 46573 Da    PI: 7.5175
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603184.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP146.71.6e-451232732133
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasn 84 
                     +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ ai el ++            +           ssss+++
  XP_009603184.1 123 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIAELSENipqkdynkiinsN-----------SSSSEDQ 206
                     79**************************************************************8666665554321...........1111121 PP

             TCP  85 sssg.................kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                     +s++                 + ++ +  + +++ s+  +++++k esr+karararert+ekm+ik
  XP_009603184.1 207 KSESlmsecevlsrweensnnEGKRGKDINMNDRLSEMVQNSPHKrESRNKARARARERTKEKMMIK 273
                     2222233334444444444334444444555555555556777778******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.6E-45123271IPR005333Transcription factor, TCP
PROSITE profilePS5136935.557125183IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.52252269IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MFPSGNSQET FNLYTSKAFL EKSFTYGHHQ NPSSSSRQED VASFLNFPSP FLDDHNNELP  60
SLNQILSHQH HQDQEAGDHH HAKESNVTHN ISCETSKEEM SIEAAKTSSK KRNLSATPPR  120
RRTGKKDRHS KICTAQGVRD RRVRLSLHIA RKFFDLQDML GFDKASKTIE WLFSKSNNAI  180
AELSENIPQK DYNKIINSNS SSSEDQKSES LMSECEVLSR WEENSNNEGK RGKDINMNDR  240
LSEMVQNSPH KRESRNKARA RARERTKEKM MIKGLDKKGN KQWYETNPNS STNILDHLGS  300
SSNSGFLDQE YSNNNSYNNT SVNQEKDSPL EANSQSLEHQ FISNYYANSS AAIGGLDSGN  360
CFLGFLGNWE YAPMSYAGNP SSIYLANSSY QFQPLDQEKH LSCRHHRQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1663671e-165AY166367.1 Nicotiana sylvestris clone 12.4 TCP gene, partial sequence.
GenBankAY1681631e-165AY168163.1 Nicotiana sylvestris NsTCP1 TCP protein (TCP) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603184.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A314LFU70.0A0A314LFU7_NICAT; Transcription factor tcp12
STRINGXP_009603184.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-30TCP domain protein 12