PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603016.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 333aa    MW: 36783.7 Da    PI: 4.532
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.73.4e-37261162101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed+++++++sw+e+g+sf+v++++efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+ll++
  XP_009603016.1  26 FLTKTYQLVEDPSIDDVVSWNEDGSSFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGDKSLLRD 111
                     9*****************************************************************99.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     i+r+k
  XP_009603016.1 112 IQRRK 116
                     ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.7E-3917109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6022115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.22E-3623115IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.4E-3326115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-212649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-216476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.1E-217789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MTPPPIERNG GESTAGETAR SVPTPFLTKT YQLVEDPSID DVVSWNEDGS SFIVWNPTEF  60
ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFSNDC FRRGDKSLLR DIQRRKVVTP  120
IATPCAAVTA VVTVAAPPAQ PPRPVISTSD SGDEQVVSSN SSTGGTAGLL GENERLKKEN  180
LQLNKELSQM RSLCGNIYSL MSNYADSSTS GNQSAESISP AVKPLDLLPT KLSVDESDIN  240
MAAGDGGNQA EPEDIRTRLF GFSIGMKRVR DGDEARAEHD QELRLQQPGH DVKSEPLDEE  300
NGCENEERSW LIHCSGRNQR VCNDSEDDVC NLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-2761157129Heat shock factor protein 1
5d5v_B6e-2761157129Heat shock factor protein 1
5d5v_D6e-2761157129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603015.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_009603016.10.0PREDICTED: heat stress transcription factor B-2b
RefseqXP_009603017.10.0PREDICTED: heat stress transcription factor B-2b
SwissprotQ9SCW44e-89HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A1S4CW650.0A0A1S4CW65_TOBAC; heat stress transcription factor B-2b-like
STRINGXP_009603015.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-76heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]