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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009602580.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | G2-like | ||||||||
| Protein Properties | Length: 295aa MW: 32233.1 Da PI: 7.2962 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 108.1 | 4.8e-34 | 11 | 65 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
XP_009602580.1 11 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 65
79****************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 14.167 | 8 | 68 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.22E-17 | 10 | 65 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.5E-32 | 10 | 66 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.1E-25 | 11 | 66 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.1E-9 | 13 | 64 | IPR001005 | SANT/Myb domain |
| Pfam | PF14379 | 2.7E-23 | 98 | 144 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 295 aa Download sequence Send to blast |
MEPINPSLAG KQRLRWTHEL HERFVDAVAQ LGGPDRATPK GVLRVMGVQG LTIYHVKSHL 60 QKYRLAKYLP DSSSDGKNSD KKESGDMLSS LDGSSAGVQI NEALKLQMEV QKRLHEQLEV 120 QRQLQLRIEA QGKYLKKIIE EQQRLSGVLS EVPVSGVTPS PAGENGPESD NRTDPGTPAP 180 TSEYPLVDKP VQEHAPTKSL SIDQSFSSQH EPLTPDSGCR ETSPINSPKG ERSSKKQRVG 240 AFTKADMLLP HQILESSLSS QYQQSNPVFL ASDQFNLSSG LSLGNEGSKV SGSNM |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 2e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 2e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 2e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 2e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 2e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 2e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 2e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 2e-24 | 10 | 68 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | BT014462 | 0.0 | BT014462.1 Lycopersicon esculentum clone 133809F, mRNA sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009602574.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602575.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602576.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602577.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602578.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602579.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_009602580.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_018626851.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_018626852.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Refseq | XP_018626853.1 | 0.0 | PREDICTED: myb family transcription factor PHL7-like | ||||
| Swissprot | Q9SJW0 | 1e-122 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
| TrEMBL | A0A1S3XHH7 | 0.0 | A0A1S3XHH7_TOBAC; myb family transcription factor APL-like | ||||
| STRING | XP_009602574.1 | 0.0 | (Nicotiana tomentosiformis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G01060.1 | 2e-84 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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