PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009601871.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 285aa    MW: 33136.9 Da    PI: 6.2918
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009601871.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.89e-23124185159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dg++WrKYGqK++ +s++pr Y+rCt++   +C++ k+v+  +e+p + ++tY g+H+++
  XP_009601871.1 124 VEDGCAWRKYGQKNILNSKYPRCYFRCTHKhdqDCRAAKQVQIIQENPIIYHTTYFGQHTCN 185
                     58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.9E-23111186IPR003657WRKY domain
SuperFamilySSF1182901.7E-23117185IPR003657WRKY domain
PROSITE profilePS5081116.811119187IPR003657WRKY domain
SMARTSM007742.2E-35124186IPR003657WRKY domain
PfamPF031062.2E-22125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEKPLVHQNP RKIRVMKELV EGKRFATQLQ TLFQQPIADH GSVSADELLL KIWRSFSEAI  60
TELNTWGLAF QIEEVDQADS EDRKSKDSTS ELKKKKDKQG GKDRRGCYKR RKTSASWMRE  120
SATVEDGCAW RKYGQKNILN SKYPRCYFRC THKHDQDCRA AKQVQIIQEN PIIYHTTYFG  180
QHTCNSVKIP KHEMESPSFE VKQLLPSSDT IDNSHDSTVN KEEDQEIKVQ SDVSSSTMDS  240
NLWQDFAHDS IMADHSSYFE RVISSDMEDF DKFSDFHFDE AIEFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-20124184868OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193111KKKDKQGGKDRRGCYKRRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1937700.0AF193770.1 Nicotiana tabacum DNA-binding protein 3 (WRKY3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601871.10.0PREDICTED: probable WRKY transcription factor 70
SwissprotK4BIZ91e-95WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A1S3ZRA70.0A0A1S3ZRA7_TOBAC; probable WRKY transcription factor 70
STRINGXP_009601871.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-38WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]