PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009601613.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 406aa    MW: 45641.5 Da    PI: 8.2875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009601613.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07235257123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  XP_009601613.1 235 HYCQVCGKGFKRDANLRMHMRAH 257
                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.24E-6234259No hitNo description
Gene3DG3DSA:3.30.160.605.2E-7235294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034235257IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.653235262IPR007087Zinc finger, C2H2
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
SMARTSM0035574291324IPR015880Zinc finger, C2H2-like
SMARTSM0035527329351IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MIEGTTNIPC FPNTNPQNLP LYAPIHHNLD QDQDHMISSS VHVAATSTLN HSPQPSNSFL  60
YNLSLLKEKV DQVQSLATMF ISTDNQTIVQ ASESTSMAIA NMGSLIQEII TTASSLMFSC  120
QKISLGSTST TNNINSSRFL EPSQIKLQDD GHVDHLPQGF YSNETLDHWY EENYASCSNI  180
EDNKSQSTII AITDHSNVQL GKRKFKNEGM QNISSQENCD IIELEAADLL AKYTHYCQVC  240
GKGFKRDANL RMHMRAHGDE YKSNAALSNP LKNNGNNNGI NDGLSKLSKK YSCPQEGCRW  300
NKKHAKFQPL KSMICVKNHY KRSHCPKMYM CNRCNKKQFS VLSDLRTHEK HCGDLKWQCS  360
CGTTFSRKDK LMGHVALFVG HTPVINSLAK MRKYEQNNVQ FSSITG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601613.10.0PREDICTED: zinc finger protein STOP1 homolog
SwissprotQ0WT241e-110STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A1S4ANS90.0A0A1S4ANS9_TOBAC; zinc finger protein STOP1 homolog
TrEMBLA0A1U7YKX10.0A0A1U7YKX1_NICSY; zinc finger protein STOP1 homolog
STRINGXP_009601613.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112652225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-109C2H2 family protein