PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601478.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 700aa MW: 80189.3 Da PI: 8.1524

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.7e-20	83	176	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY e+A+ +GFs+r+++++ + + t+r fvC + g++ + ++++ +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel XP_009601478.1 83 EFYAEFARGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAANDNRPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNHELL 176 6************9998877356667999************99******************99777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-17	83	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-20	299	390	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	577	610	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-7	580	608	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	585	612	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MKPLIRFSDS VCSEQYLDKF IMSEEAGQMM VLYGDSSDQR SLSLDDTSST EESPDQTRLS 60 LETTNDAVPY IGQRFPTHDA AYEFYAEFAR GCGFSIRRHR TEGKDGVGKG LTRRYFVCHR 120 AGNTPVKAAN DNRPQRNRKS SRCGCQAYMR ISKTTDLGVP EWRVTGFMNH HNHELLEPNQ 180 VRFLPAYRSI SDSDKSRILM FAKTGISVQQ MMRLMELEKG VEPGFLPFTE KDVRNLLQSF 240 RKVDPEDESI DLLRMCRNIK EKDPNFKYDF SLDSNNKLEN IAWSYASSIQ SYDVFGDAVV 300 FDTTHRLAAF DMPLGIWVGV NNYGMPCFFG CVLLREETLR SYSWSLKAFL AFMNGKAPQT 360 VLTDQNMCLK EAINLEMPST KHALCIWLIV SKFPSWFNAV LGVRYNDWKA EFHRLYNLES 420 VEDFELGWRD MVNSFGLHTN RHIASLFALR SLWALPYLRS HVFAGMTTAG HSKSINAFIQ 480 RFLSAQTRLA HFVEQVAVTV DFKDQAGEQQ TMQQNLQNIC LKTGAPMEAH AATVLTPFAF 540 SKLQEQLVLA AHYASFQMED GFLVRHHTKL EGGRKVYWVP REGIISCSCH QFEFSGILCR 600 HALRVLSTGN CFQIPDRYLP HRWRRFSTPS TKSLQNTHND HTERVQLLQS MVSTLVTESA 660 KSRERLEIAT ENVSILLLKI REQPICSQGV RELSSNQRNI

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MKPLIRFSDS VCSEQYLDKF IMSEEAGQMM VLYGDSSDQR SLSLDDTSST EESPDQTRLS  60
LETTNDAVPY IGQRFPTHDA AYEFYAEFAR GCGFSIRRHR TEGKDGVGKG LTRRYFVCHR  120
AGNTPVKAAN DNRPQRNRKS SRCGCQAYMR ISKTTDLGVP EWRVTGFMNH HNHELLEPNQ  180
VRFLPAYRSI SDSDKSRILM FAKTGISVQQ MMRLMELEKG VEPGFLPFTE KDVRNLLQSF  240
RKVDPEDESI DLLRMCRNIK EKDPNFKYDF SLDSNNKLEN IAWSYASSIQ SYDVFGDAVV  300
FDTTHRLAAF DMPLGIWVGV NNYGMPCFFG CVLLREETLR SYSWSLKAFL AFMNGKAPQT  360
VLTDQNMCLK EAINLEMPST KHALCIWLIV SKFPSWFNAV LGVRYNDWKA EFHRLYNLES  420
VEDFELGWRD MVNSFGLHTN RHIASLFALR SLWALPYLRS HVFAGMTTAG HSKSINAFIQ  480
RFLSAQTRLA HFVEQVAVTV DFKDQAGEQQ TMQQNLQNIC LKTGAPMEAH AATVLTPFAF  540
SKLQEQLVLA AHYASFQMED GFLVRHHTKL EGGRKVYWVP REGIISCSCH QFEFSGILCR  600
HALRVLSTGN CFQIPDRYLP HRWRRFSTPS TKSLQNTHND HTERVQLLQS MVSTLVTESA  660
KSRERLEIAT ENVSILLLKI REQPICSQGV RELSSNQRNI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601478.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S4BBL6	0.0	A0A1S4BBL6_TOBAC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRING	XP_009601478.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA10896	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]