PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601442.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 278aa MW: 29815.7 Da PI: 10.9479

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601442.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.3	6.6e-35	71	138	6	73
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 + +++ hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlq a+p+i+ +tgt++++a ++ XP_009601442.1 71 TYTKDQHTKVEGRGRRIRMPATCAARVFQLTRELGHKTDGETIQWLLQHAEPSIISATGTGTTPAIAV 138 569*********************************************************99999555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-29	72	152	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	25.422	73	127	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MVAPPLARRR QVAPPIATPL ISPKQEPHDM ADQKPPAPPI IKVTLPTPTL KHSVSPPHLP 60 PPPPPHNKAA TYTKDQHTKV EGRGRRIRMP ATCAARVFQL TRELGHKTDG ETIQWLLQHA 120 EPSIISATGT GTTPAIAVSV NGTLKIPTTK NDPLTRKRKR CTNSEFIDVK QRSCHTTMTT 180 CSTSTIDVKS NKVTTIFAPI MSIIPSQTIM PHVSMFAVAA ASTVWIIPQT PSAAPVLAVQ 240 PINCVSTVRP AALLNIPSAV IPLSTNNASI SSSFSLGH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601442.1	0.0	PREDICTED: transcription factor TCP9-like
Refseq	XP_016502708.1	0.0	PREDICTED: transcription factor TCP9-like
Swissprot	O64647	3e-50	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A1S4CN85	0.0	A0A1S4CN85_TOBAC; transcription factor TCP9-like
STRING	XP_009601442.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	2e-50	TCP family protein