PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601216.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 325aa MW: 36383.9 Da PI: 9.0844

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601216.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	175.6	1.4e-54	12	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL +k+++ +++ ++i++vd++k+ePwdLp k+k + kewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++s+ XP_009601216.1 12 LPPGFRFHPTDEELITYYLVNKISDASFTG-RAIADVDLNKSEPWDLPGKAKMGGKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEIFSS 105 79***********************999.89***********999999***********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfykgrap+gek++Wvmheyr+ XP_009601216.1 106 kTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRI 139 67788*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-64	6	161	IPR003441	NAC domain
PROSITE profile	PS51005	61.475	12	161	IPR003441	NAC domain
Pfam	PF02365	9.6E-29	13	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MELEVNKEES SLPPGFRFHP TDEELITYYL VNKISDASFT GRAIADVDLN KSEPWDLPGK 60 AKMGGKEWYF FSLRDRKYPT GVRTNRATNT GYWKTTGKDK EIFSSKTSEL VGMKKTLVFY 120 KGRAPRGEKS NWVMHEYRIR SKSSYRTNKQ DEWVVCRIFQ KSAGLKKYPT NHSRTVVNPY 180 SLEINQNAIS SQIMMQPDHG FQFAMGRNYI NHASNYMNNF PIQQPQMNYN IGGSSSGGGG 240 GGGDNFFTIS GLNLNLGGGA AASSQPVLRP MPPPPPPPTQ VMNIQQEVMT SSMLDNCAIT 300 SEAGYGAEMN SANYCADLDN YWATY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	11	167	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	11	167	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-55	11	167	19	174	NAC domain-containing protein 19
3swm_B	4e-55	11	167	19	174	NAC domain-containing protein 19
3swm_C	4e-55	11	167	19	174	NAC domain-containing protein 19
3swm_D	4e-55	11	167	19	174	NAC domain-containing protein 19
3swp_A	4e-55	11	167	19	174	NAC domain-containing protein 19
3swp_B	4e-55	11	167	19	174	NAC domain-containing protein 19
3swp_C	4e-55	11	167	19	174	NAC domain-containing protein 19
3swp_D	4e-55	11	167	19	174	NAC domain-containing protein 19
4dul_A	3e-55	11	167	16	171	NAC domain-containing protein 19
4dul_B	3e-55	11	167	16	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510216	1e-137	AF510216.1 Petunia x hybrida nam-like protein 19 (NH19) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601216.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
Refseq	XP_016457772.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A1S3Z0W3	0.0	A0A1S3Z0W3_TOBAC; protein CUP-SHAPED COTYLEDON 1-like
STRING	XP_009601216.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-105	NAC domain containing protein 38