PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601134.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 775aa MW: 88897.7 Da PI: 8.1656

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	56	131	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn YA+++GF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnHel XP_009601134.1 56 EFYNLYATKLGFRIRIGQLYRSRVDGSVISRRFVCSKEGFQTT--------------SRTGCPAFIRVQKADSGKWVLANVKKEHNHELE 131 6*************************************976..............589**************************96 PP
2	FAR1	69.3	9.3e-22	211	285	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA ++GF+vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a ++++++++g+w v+++++eHnHel XP_009601134.1 211 EFYNAYAANLGFKVRIGQLFRSKNDGSITSRRFVCSKEGHQHP--------------SRVGCGAFMRIQRQETGRWLVDRFQNEHNHEL 285 6************************************9998..............4899************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-17	56	131	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.9E-17	211	285	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-27	383	476	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.41	661	697	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.9E-7	670	694	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	5.9E-8	672	699	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 775 aa Download sequence Send to blast
MSREELDNPM ILRAKPAALA IVNNNNCYHR NNEEEGESKL EPNVGLEFDS AEEAQEFYNL 60 YATKLGFRIR IGQLYRSRVD GSVISRRFVC SKEGFQTTSR TGCPAFIRVQ KADSGKWVLA 120 NVKKEHNHEL ETSGEICPSR VQRKNIPNLK SPVVVVSTRT GLRSIDEDGP GPSGIIDLKR 180 FKRERIDVEL QPRGSEPYKG LEFTSAGEAY EFYNAYAANL GFKVRIGQLF RSKNDGSITS 240 RRFVCSKEGH QHPSRVGCGA FMRIQRQETG RWLVDRFQNE HNHELGLPVD ASGRVKGFKE 300 EASSVLENMD LVELNGGLSL VTRGRESRIG SDWYNELFEY FQARQADDMG FFYAVEMHNG 360 RAMSVFWADA RSRFSCTQFG DAVVFDTTYR KGGSYSVPLA SFIGINHHRQ PVLLGCALIA 420 EESEESFTWV FQAWLRAMSG RHPVSIVADQ DRSIQHSIAQ VFPGIHHRFS AWQIKATEQE 480 NIGALLSMNP EFKYEYETCI FQSQTANEFE AAWNVLVNKY NLRKNTWLME MYRMRKSWVP 540 LHIRGTFFAG IPMDGSLKSY FGTILTSQTP LSEFLIRYEK ALEQRREEER KEDFNSFNLQ 600 AVLHTKDPIE DQCRRLYTIT MFQVFQKELL ECYSFVGIKI NVEGAISRYL VQKSGSGDER 660 NTVAFNASSL NVSCSCKMFE FEGVLCRHAL KVFQIMNIRE LPSRYILHRW TKDAKYGILR 720 DVDSGGASKD HKALMLWSLR EEAKNYIEAG TASLERYKLA FEIMQEGRRN LCWQN

Sequence ? help Back to Top

Protein Sequence Length: 775 aa Download sequence Send to blast

MSREELDNPM ILRAKPAALA IVNNNNCYHR NNEEEGESKL EPNVGLEFDS AEEAQEFYNL  60
YATKLGFRIR IGQLYRSRVD GSVISRRFVC SKEGFQTTSR TGCPAFIRVQ KADSGKWVLA  120
NVKKEHNHEL ETSGEICPSR VQRKNIPNLK SPVVVVSTRT GLRSIDEDGP GPSGIIDLKR  180
FKRERIDVEL QPRGSEPYKG LEFTSAGEAY EFYNAYAANL GFKVRIGQLF RSKNDGSITS  240
RRFVCSKEGH QHPSRVGCGA FMRIQRQETG RWLVDRFQNE HNHELGLPVD ASGRVKGFKE  300
EASSVLENMD LVELNGGLSL VTRGRESRIG SDWYNELFEY FQARQADDMG FFYAVEMHNG  360
RAMSVFWADA RSRFSCTQFG DAVVFDTTYR KGGSYSVPLA SFIGINHHRQ PVLLGCALIA  420
EESEESFTWV FQAWLRAMSG RHPVSIVADQ DRSIQHSIAQ VFPGIHHRFS AWQIKATEQE  480
NIGALLSMNP EFKYEYETCI FQSQTANEFE AAWNVLVNKY NLRKNTWLME MYRMRKSWVP  540
LHIRGTFFAG IPMDGSLKSY FGTILTSQTP LSEFLIRYEK ALEQRREEER KEDFNSFNLQ  600
AVLHTKDPIE DQCRRLYTIT MFQVFQKELL ECYSFVGIKI NVEGAISRYL VQKSGSGDER  660
NTVAFNASSL NVSCSCKMFE FEGVLCRHAL KVFQIMNIRE LPSRYILHRW TKDAKYGILR  720
DVDSGGASKD HKALMLWSLR EEAKNYIEAG TASLERYKLA FEIMQEGRRN LCWQN

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	0.0	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601134.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_009601135.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Refseq	XP_009601136.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A1S4BE80	0.0	A0A1S4BE80_TOBAC; protein FAR1-RELATED SEQUENCE 7-like
TrEMBL	A0A1U7XGN8	0.0	A0A1U7XGN8_NICSY; protein FAR1-RELATED SEQUENCE 7-like
STRING	XP_009601134.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]