PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009601065.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 353aa    MW: 40557.3 Da    PI: 9.3735
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009601065.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.48.3e-411102302136
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaak 96 
                     +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL+ ++k aikel ++  +++ e     ++s ++++++   +++++ 
  XP_009601065.1 110 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFSKSKNAIKELSRN--IPQ-EI----NNSIGDQNNI---MSESH- 193
                     79**************************************************************..444.11....1111221122...22222. PP

             TCP  97 skksqksaasalnlak.esrakarararertrekmriknkl 136
                         +   + +++l k e + kara+are+t+ekm+ik ++
  XP_009601065.1 194 --ILEC--EDHRKLRKmELKDKARAKARENTKEKMMIKGNK 230
                     ..2222..223556666788899**************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-38110245IPR005333Transcription factor, TCP
PROSITE profilePS5136937.361112170IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MFPKSNPFSY TSQELLKHSY AHDAYHQNPN STSIIVEDHP FFLNNFPSPF LDDHESPLSQ  60
IFSHQQQQEP EANVKIIENQ SSNPSKKIQA EPVSPSSKKR KLSAKPRRRT GKKDRHSKIC  120
TAQGVRDRRM RLSLQIARKF FDLQDMLGFD KASKTIEWLF SKSKNAIKEL SRNIPQEINN  180
SIGDQNNIMS ESHILECEDH RKLRKMELKD KARAKARENT KEKMMIKGNK KGKELYETNP  240
KNVEANSQTL ENKFANVGIM ESYLGGTSSS ISSIFDYQNS GVRGGNIDYF DNCYMGFLEN  300
WDSKNSNSSC STTMTNEVQI PVAGNNNTSS IYLDNSRYQF QFLDQENHFS CRH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198108KRKLSAKPRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755171e-100HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
GenBankHM9210671e-100HM921067.1 Solanum lycopersicum BRANCHED2b gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601065.10.0PREDICTED: transcription factor TCP12-like
TrEMBLA0A1S3YEK70.0A0A1S3YEK7_TOBAC; transcription factor TCP12-like
STRINGXP_009601065.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-32TCP domain protein 12