PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600646.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 297aa    MW: 33624.1 Da    PI: 6.9227
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.6e-08326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC+ffar G C  G+ C F H+
  XP_009600646.1  3 KRVLCKFFAR-GACLKGEHCDFLHD 26
                    99********.*************6 PP
2zf-CCCH231.4e-073454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C ++++ G+C +G+rC++ H+
  XP_009600646.1 34 VCTYYQK-GICAFGSRCRYEHV 54
                    5******.***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.328128IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-6329IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.312956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-53153IPR000571Zinc finger, CCCH-type
SMARTSM003560.00223155IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-53454IPR000571Zinc finger, CCCH-type
SuperFamilySSF578503.28E-12115186No hitNo description
Gene3DG3DSA:3.30.40.101.5E-9115181IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001626.70E-4121181No hitNo description
SMARTSM001849.1E-7122179IPR001841Zinc finger, RING-type
PfamPF000972.1E-7122179IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.238122180IPR001841Zinc finger, RING-type
PROSITE patternPS005180146155IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010312.821209238IPR000571Zinc finger, CCCH-type
SMARTSM003560.033209237IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MSKRVLCKFF ARGACLKGEH CDFLHDSEDV PNNVCTYYQK GICAFGSRCR YEHVKITRSQ  60
PSLPSSSANI VELKRVNATD QSICSSSTAG NCPQGKKEEH MKTCETRENQ HDLLKHSQEI  120
ECGVCLERVL SKTIMAERKF GILSECDHPF CISCIRNWRN SSPSIGMDVN STLRACPICR  180
KLSYFVIPSV IWYSTKEEKQ EIINSYKAKL RSIDCKKFDF GNGTCPFGAS CFYKHTVKPG  240
SKLWNSTLMP DLHGSSFSDA DETESGSDGD MESFRALFEE AMAFMMWLRD YDTSDDE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600646.10.0PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X2
SwissprotE0X9N41e-104C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A1S4C3R10.0A0A1S4C3R1_TOBAC; E3 ubiquitin-protein ligase makorin-like isoform X2
STRINGXP_009600645.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-107C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]