PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009600092.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 334aa MW: 37246.3 Da PI: 9.9177

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600092.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.2	2.5e-31	263	320	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++p+++++tYegeHnh+ XP_009600092.1 263 DDYSWRKYGQKPIKGSPHPRAYYKCSSVrGCPARKHVERALDEPSMLVVTYEGEHNHS 320 99**********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	7.3E-14	215	259	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	5.2E-33	247	320	IPR003657	WRKY domain
PROSITE profile	PS50811	30.113	256	322	IPR003657	WRKY domain
SuperFamily	SSF118290	8.5E-27	258	320	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	261	321	IPR003657	WRKY domain
Pfam	PF03106	8.5E-27	263	319	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAVELMLDYR NTSRNNCTIF NTKLEEKAVV QEAASGLESV EKLLKLLSQT QSQSQQQQKQ 60 GNLSSFLKQE NSPMEIEIVA DAAVTKFKNV ISLLGRTRTG HARFRRAPIT SPPKIKKDFT 120 DTKVYCPTPI QQVPPVAYEL YNHQFFQNPR DGVVEKQELA TKKSINFSYG QDISRSNSFN 180 MSTLTGETES SSFKISNLSS AGKPPLSTSS SFKIKCCSSE NGLSGKCSGS SGRCHCSKRR 240 KLRLKRVERV AAISMKMSDI PPDDYSWRKY GQKPIKGSPH PRAYYKCSSV RGCPARKHVE 300 RALDEPSMLV VTYEGEHNHS LSVAETSSLI LESS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-21	249	321	2	73	WRKY transcription factor 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ538876	5e-51	AJ538876.1 Nicotiana tabacum cDNA-AFLP-fragment BT2-M23-021.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600092.1	0.0	PREDICTED: probable WRKY transcription factor 15
Refseq	XP_016447271.1	0.0	PREDICTED: probable WRKY transcription factor 15
TrEMBL	A0A1S3Y521	0.0	A0A1S3Y521_TOBAC; probable WRKY transcription factor 15
STRING	XP_009600092.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1220	24	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G23320.1	4e-72	WRKY DNA-binding protein 15