PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009600091.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

WRKY

Protein Properties

Length: 309aa MW: 34671.4 Da PI: 6.843

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	84.2	1.2e-26	186	239	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fpr Ct+++C+vkk+vers edp++v++tYeg+Hnh XP_009600091.1 186 EDGYRWRKYGQKAVKNSPFPR----CTTQKCNVKKRVERSYEDPSIVITTYEGQHNHY 239 8*****************6....******************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.5E-28	170	240	IPR003657	WRKY domain
SuperFamily	SSF118290	2.35E-23	177	241	IPR003657	WRKY domain
PROSITE profile	PS50811	25.706	180	241	IPR003657	WRKY domain
SMART	SM00774	3.8E-32	185	240	IPR003657	WRKY domain
Pfam	PF03106	1.1E-19	186	238	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSNNPFYHDY MGTEGINTFP FFGENSSNYN HPPPNNIQNP HQQFVPSSYM TLTECLHSSM 60 DYNTLSSAFG MSCSSSEVVC PQIDRHDYSS RKSSVVSATE SALDSPLEGA SVEIPPTTNS 120 SISSTSNEAE GEEDSSKSKK LMQGKGCQEE GDDKSKKESK AKKKGEKKPK EPRFAFMTKS 180 EIDNLEDGYR WRKYGQKAVK NSPFPRCTTQ KCNVKKRVER SYEDPSIVIT TYEGQHNHYC 240 PATLRGNAVS MLSPSFLSSS QLIPNFPPEI FAQMLNPTSN QNLLINSPYN YHQHQGQEYG 300 SWIHKPEPS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-21	178	242	10	78	Probable WRKY transcription factor 4
2lex_A	3e-21	178	242	10	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600091.1	0.0	PREDICTED: probable WRKY transcription factor 71 isoform X2
Swissprot	Q8VWJ2	3e-50	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A1S4A4M7	0.0	A0A1S4A4M7_TOBAC; probable WRKY transcription factor 71 isoform X2
STRING	XP_009600091.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1485	24	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	5e-43	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]