PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009599705.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 757aa MW: 86168 Da PI: 6.505

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009599705.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.5	1.5e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY+++Ak+ GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnHel XP_009599705.1 59 EFYCSFAKQSGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSEDGKLQRNRKSSRCGCQAFMRIVKRAdfnVPEWRITGFSNVHNHELL 152 6*************999887455667****************9***************98887676789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.6E-18	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.8E-22	275	366	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.188	551	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.2E-8	552	585	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.5E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MPEITSTAKE ISENGTDSSQ DDIGTVEEMP EDIILSRQTS VNLVPFIGQR FVSQDAAYEF 60 YCSFAKQSGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG 120 CQAFMRIVKR ADFNVPEWRI TGFSNVHNHE LLKSTEVQLV PAYCTMSPDD KSRICMFAKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEVDVR NLLQSFRNVD QDNDPIDLLK MCKEMKDKDP 240 NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDSIVFDTT HRLDAYDMLL GIWIGVDNHG 300 MHCFFGCVLL RDENLQSFSW ALKTFLGSIN GKAPGTILTD QNLWLKEAIV TEIPRAKHAF 360 CIWHIISRFS DWFLTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMVKT YKLDENKHIV 420 SLYALRSYWA LPFLRSYFFA GMTSTFQSET INTYIQRILS VQSVLDNFVE QVARVVGAKD 480 QAGGKHKVQR NVQNVPLKTG SPIESHAATV LTPYAFSKLQ EELVLAPQYA SLMVDESYFI 540 VRHHTEMDGG YKVLWVPHEE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDQYLPTRW 600 RECSSSLAKP ALFSLPSDNT GKIQLLQSMI STLITESVET EERLNVVCDE VSTVLSRIKG 660 FPTASTGGNA IAYESPSDSL ILAEVEDSDG IGQSFACNPH EYINLAKLKE RGSRDGLDLY 720 RKRGHLSVLC CGQYGHDASD CPMMEGEDLN GDRLGFL

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MPEITSTAKE ISENGTDSSQ DDIGTVEEMP EDIILSRQTS VNLVPFIGQR FVSQDAAYEF  60
YCSFAKQSGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSEDGKL QRNRKSSRCG  120
CQAFMRIVKR ADFNVPEWRI TGFSNVHNHE LLKSTEVQLV PAYCTMSPDD KSRICMFAKA  180
GMSVRQMLRL MELEKGVKLG CLPFTEVDVR NLLQSFRNVD QDNDPIDLLK MCKEMKDKDP  240
NFKYDYKIDC NNRLEHIAWS YASSMRLYEA FGDSIVFDTT HRLDAYDMLL GIWIGVDNHG  300
MHCFFGCVLL RDENLQSFSW ALKTFLGSIN GKAPGTILTD QNLWLKEAIV TEIPRAKHAF  360
CIWHIISRFS DWFLTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMVKT YKLDENKHIV  420
SLYALRSYWA LPFLRSYFFA GMTSTFQSET INTYIQRILS VQSVLDNFVE QVARVVGAKD  480
QAGGKHKVQR NVQNVPLKTG SPIESHAATV LTPYAFSKLQ EELVLAPQYA SLMVDESYFI  540
VRHHTEMDGG YKVLWVPHEE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDQYLPTRW  600
RECSSSLAKP ALFSLPSDNT GKIQLLQSMI STLITESVET EERLNVVCDE VSTVLSRIKG  660
FPTASTGGNA IAYESPSDSL ILAEVEDSDG IGQSFACNPH EYINLAKLKE RGSRDGLDLY  720
RKRGHLSVLC CGQYGHDASD CPMMEGEDLN GDRLGFL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599705.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S4AL38	0.0	A0A1S4AL38_TOBAC; protein FAR1-RELATED SEQUENCE 11-like
STRING	XP_009599705.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13535	14	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]