PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009599507.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 99aa MW: 11204.9 Da PI: 10.9904

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009599507.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.3	1.3e-20	16	63	2	49
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+ + k y++ XP_009599507.1 16 KIENQNNRQVTFSKRRNGVFKKANELVVMTGAEVGIIVCPQGSKPYTF 63 79************************************9988888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.88	7	67	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.7E-24	7	66	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	9	29	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.44E-23	9	77	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-21	16	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-16	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MSTRRIKVRK SIRLAKIENQ NNRQVTFSKR RNGVFKKANE LVVMTGAEVG IIVCPQGSKP 60 YTFGHPNVNE TINKYVGEER PPSPSSPGID DKYVQMSRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269\|PubMed:18599653, ECO:0000269\|PubMed:18713950}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016514332.1	1e-67	PREDICTED: agamous-like MADS-box protein AGL62
Swissprot	Q4PSU4	1e-19	AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBL	A0A1S4DLQ0	2e-66	A0A1S4DLQ0_TOBAC; agamous-like MADS-box protein AGL62
STRING	XP_009599507.1	6e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3829	4	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	2e-22	AGAMOUS-like 61

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]