PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009599235.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 476aa    MW: 53272.1 Da    PI: 7.8127
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009599235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.48.2e-30231289259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+ ed +++++tYeg+Hnh+
  XP_009599235.1 231 HDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCFEDMSILITTYEGTHNHP 289
                     7**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-30215289IPR003657WRKY domain
SuperFamilySSF1182908.63E-27223290IPR003657WRKY domain
PROSITE profilePS5081127.267225291IPR003657WRKY domain
SMARTSM007749.3E-36230290IPR003657WRKY domain
PfamPF031064.5E-26232289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MLRKYSAMDS TTSIYDKEQV LLVSTKKATL TTTMNTNSRD SSLNYKKNDQ EDKLNSTKAQ  60
IDEAKQENER LKSMLSKTIK DYQSLQMHFQ GISQNSKDII ATSIEQEQVE LVSLSLGRSS  120
REFKQDEKEY DQNECKDIKK QSKLFDGLEL GLNYRCSPDF TEVTKHYDDS PENSFEESKK  180
EHIISEPCIQ NYPSSKMSRI CGDEDEDFLQ QNPQKKARVS IRAVCDTTTM HDGCQWRKYG  240
QKIAKGNPCP RAYYRCTVSP SCPVRKQVQR CFEDMSILIT TYEGTHNHPL SFSATAMAST  300
TSAAASMLSC TSSSTSQQGI INANTNNNVH VFNFTTSNTN LLATHAPNTF YVPRTSISTS  360
QTHPTITLDF TTVPTTTSSS TNTFSSQRYS STSLNFSTLP STPPSSSFIN SYTPLCNNFK  420
SQTGAASYLG RPCFSQPFTS NNTQNMTVED SGGARNSINW IQKNTKVSHL GFDPVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-18222290273WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009599235.10.0PREDICTED: probable WRKY transcription factor 72 isoform X1
TrEMBLA0A1S4C7U50.0A0A1S4C7U5_TOBAC; probable WRKY transcription factor 72 isoform X1
STRINGXP_009599235.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19452464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.13e-55WRKY DNA-binding protein 61