PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598833.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 564aa MW: 62638.6 Da PI: 7.6841 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.2 | 1.4e-32 | 99 | 155 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+g Hnh+ XP_009598833.1 99 DDGYTWRKYGQKHVKGSEFPRSYYKCTQQNCPVKKKVERSP-DGQITEIVYKGAHNHH 155 8****************************************.***************8 PP | |||||||
2 | WRKY | 103.1 | 1.6e-32 | 311 | 369 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+ ++ v++tYeg+Hnhe XP_009598833.1 311 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERAPDNLISVITTYEGKHNHE 369 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.9E-28 | 88 | 156 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.8E-25 | 95 | 156 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-36 | 98 | 156 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.814 | 99 | 157 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.7E-25 | 99 | 155 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-35 | 296 | 371 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-28 | 304 | 371 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.472 | 306 | 371 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-38 | 311 | 370 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 312 | 369 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 564 aa Download sequence Send to blast |
MAPQSPTTGS FHFSTINQEN TMKTTQIARD HFEFPVESPK ATALKKCSLD IACETNVQQN 60 MSCIGLTNIH ESGNCARRAN QFEQRSAVTS NNITCNGSDD GYTWRKYGQK HVKGSEFPRS 120 YYKCTQQNCP VKKKVERSPD GQITEIVYKG AHNHHKSQPP RRATMSSTVY GLGETSEMSE 180 GNIGGSNSWR SVQFERNKDV RAPSGLDRTS SASVLTKVSD PLMLNYQKTN INAFESAGTT 240 PEPSSTLASR DDEDEDRATE GSTSLGDDVD DYAFDHKRRR REFYSVETSL SSRTTREPRV 300 VVQIESEIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTSA GCPVRKHVER APDNLISVIT 360 TYEGKHNHEV PSANKTNCAI SGNQALTSTS KTHKVSNLGM QVQDCNFQFN RKPFDYVRPS 420 FLDLRFGATS PIYDLKFPTN LHSYGSFLLS PTQVSNSCSF APLQMPEFPL PLSLPMSLPL 480 VGPNIVPPLG GFHFNDLPLT PNGVSSHSSI AVGDQKYIHD DNNNNKNAII VRGNEEIKNE 540 NLCDHQNGAS SAVLCGQIMD NFPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-32 | 99 | 372 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-32 | 99 | 372 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}. | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}. | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR559678 | 0.0 | KR559678.1 Nicotiana benthamiana WRKY transcription factor (WRKY79) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598832.1 | 0.0 | PREDICTED: probable WRKY transcription factor 33 isoform X1 | ||||
Swissprot | Q6B6R4 | 5e-79 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
Swissprot | Q6IEQ7 | 4e-79 | WRK24_ORYSJ; WRKY transcription factor WRKY24 | ||||
TrEMBL | A0A1S4BBY8 | 0.0 | A0A1S4BBY8_TOBAC; probable WRKY transcription factor 33 isoform X1 | ||||
STRING | XP_009598832.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 8e-78 | WRKY DNA-binding protein 2 |
Publications ? help Back to Top | |||
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