PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009598832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 683aa MW: 75591 Da PI: 6.9887 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.9 | 1.9e-32 | 218 | 274 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+g Hnh+ XP_009598832.1 218 DDGYTWRKYGQKHVKGSEFPRSYYKCTQQNCPVKKKVERSP-DGQITEIVYKGAHNHH 274 8****************************************.***************8 PP | |||||||
2 | WRKY | 102.7 | 2e-32 | 430 | 488 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagCpv+k+ver+ ++ v++tYeg+Hnhe XP_009598832.1 430 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERAPDNLISVITTYEGKHNHE 488 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-28 | 207 | 275 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.89E-25 | 214 | 275 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-36 | 217 | 275 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.1E-25 | 218 | 274 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.814 | 218 | 276 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-35 | 415 | 490 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.14E-28 | 423 | 490 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.472 | 425 | 490 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-38 | 430 | 489 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-25 | 431 | 488 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence Send to blast |
MERNIGEPID DWNFQIVENL DSETMLDTHE SAVKVEERSG NAENGSLFPN NNNKRSSIAE 60 RRAAKCGFNA STISIAQFRV TTTSTPEMSP PTARPNFLTI PPGLTPAALL DSPVMLPNSL 120 APQSPTTGSF HFSTINQENT MKTTQIARDH FEFPVESPKA TALKKCSLDI ACETNVQQNM 180 SCIGLTNIHE SGNCARRANQ FEQRSAVTSN NITCNGSDDG YTWRKYGQKH VKGSEFPRSY 240 YKCTQQNCPV KKKVERSPDG QITEIVYKGA HNHHKSQPPR RATMSSTVYG LGETSEMSEG 300 NIGGSNSWRS VQFERNKDVR APSGLDRTSS ASVLTKVSDP LMLNYQKTNI NAFESAGTTP 360 EPSSTLASRD DEDEDRATEG STSLGDDVDD YAFDHKRRRR EFYSVETSLS SRTTREPRVV 420 VQIESEIDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTSAG CPVRKHVERA PDNLISVITT 480 YEGKHNHEVP SANKTNCAIS GNQALTSTSK THKVSNLGMQ VQDCNFQFNR KPFDYVRPSF 540 LDLRFGATSP IYDLKFPTNL HSYGSFLLSP TQVSNSCSFA PLQMPEFPLP LSLPMSLPLV 600 GPNIVPPLGG FHFNDLPLTP NGVSSHSSIA VGDQKYIHDD NNNNKNAIIV RGNEEIKNEN 660 LCDHQNGASS AVLCGQIMDN FPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-31 | 218 | 491 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 7e-31 | 218 | 491 | 8 | 78 | Probable WRKY transcription factor 4 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR559678 | 0.0 | KR559678.1 Nicotiana benthamiana WRKY transcription factor (WRKY79) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009598832.1 | 0.0 | PREDICTED: probable WRKY transcription factor 33 isoform X1 | ||||
TrEMBL | A0A1S4BBY8 | 0.0 | A0A1S4BBY8_TOBAC; probable WRKY transcription factor 33 isoform X1 | ||||
STRING | XP_009598832.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5767 | 22 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56270.1 | 1e-87 | WRKY DNA-binding protein 2 |