PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598797.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 250aa    MW: 27664.6 Da    PI: 8.7549
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598797.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.41.1e-19169203135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C +tkTp+WR+gp g+ktLCnaCG++yr+ +l
  XP_009598797.1 169 CTHCEVTKTPQWREGPLGPKTLCNACGVRYRSGRL 203
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.7E-15163217IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.358167199IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-14167225No hitNo description
CDDcd002027.91E-16168215No hitNo description
Gene3DG3DSA:3.30.50.103.5E-14168200IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003201.5E-17169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVEQNCWDGI PMGPIVDEDF ESLLNSLDFP LESLEDWDPS LYQLLGPIPP DALMALPPVS  60
RGDNANGCLN AANEFPEAQG TVLFQTQSPI SVLEHNSSCS GGKSTSFKFG TKGRRSKRAR  120
ASTLNPWILM ACTAFAAKKT SDAKKGKEKK RRKLSQQSSV MESILFKKCT HCEVTKTPQW  180
REGPLGPKTL CNACGVRYRS GRLLPEYRPA ASPTFVPSLH SNSHMKVIEM RRNAVEESQG  240
DLLETKRSFT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148152KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598797.10.0PREDICTED: GATA transcription factor 11-like isoform X2
RefseqXP_016510733.10.0PREDICTED: GATA transcription factor 11-like isoform X2
TrEMBLA0A1S4DBK80.0A0A1S4DBK8_TOBAC; GATA transcription factor 11-like isoform X2
STRINGXP_009598796.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-48GATA transcription factor 11