PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009598393.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family RAV
Protein Properties Length: 335aa    MW: 38656.3 Da    PI: 8.7979
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009598393.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.77.7e-104694155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV    ++g W A+I+       ++r++lg+f ++ eAa a++ a+ +l+ 
  XP_009598393.1 46 SRFKGV-IGQNNGHWGAQIYTN-----QQRIWLGTFKSETEAAMAYDSAAIRLRS 94
                    678999.4667899****8883.....5**********99************985 PP
2B398.34.7e-31173260186
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     f+k+ltpsdv+k++rlv+pkk+a+++  ++++  +++l+++d+s ++W+++++y+k+s+++v+tkGW++Fvk++gL+++D++vF l +
  XP_009598393.1 173 FQKELTPSDVGKLNRLVIPKKYASKYfpQIQEVPDVELVFYDTSRKQWKFRYCYWKSSQSFVFTKGWNRFVKDKGLRANDTIVFNLCE 260
                     99**************************88888999************************************************9764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.70E-2046104No hitNo description
SuperFamilySSF541711.18E-1346103IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.5E-1547102IPR001471AP2/ERF domain
SMARTSM003806.9E-1647108IPR001471AP2/ERF domain
PfamPF008471.7E-54793IPR001471AP2/ERF domain
PROSITE profilePS5103216.1247102IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-34168258IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-30171261IPR015300DNA-binding pseudobarrel domain
CDDcd100173.80E-29172258No hitNo description
SMARTSM010192.7E-25173267IPR003340B3 DNA binding domain
PROSITE profilePS5086314.269173280IPR003340B3 DNA binding domain
PfamPF023623.9E-27173260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEEETNMISS TTTYLTGDCD SSSTKNLQSK KHKRNAYQRK ACISGSRFKG VIGQNNGHWG  60
AQIYTNQQRI WLGTFKSETE AAMAYDSAAI RLRSQDSHRN LPWTNSTVEE PNFQKQFSTE  120
DILRMIKEGS YPSKFDEYLK EKYEECHPFN TLXSGGTKGK EEANEGFSYK QLFQKELTPS  180
DVGKLNRLVI PKKYASKYFP QIQEVPDVEL VFYDTSRKQW KFRYCYWKSS QSFVFTKGWN  240
RFVKDKGLRA NDTIVFNLCE YKTGPKEIST DFVIDVLKGI EVLPEPKVEI EERMKTQSSD  300
HAMEPVWLFG VQIGLTNNND VKYYASVSNK LGSTI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-2817225713101DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598393.10.0PREDICTED: LOW QUALITY PROTEIN: AP2/ERF and B3 domain-containing transcription factor At1g51120-like
SwissprotQ9C6888e-94RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A1S4BTX10.0A0A1S4BTX1_TOBAC; AP2/ERF and B3 domain-containing transcription factor At1g51120-like
TrEMBLA0A1U7WBE00.0A0A1U7WBE0_NICSY; AP2/ERF and B3 domain-containing transcription factor At1g51120
STRINGXP_009598393.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.13e-96RAV family protein