PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597689.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 453aa    MW: 51830.2 Da    PI: 9.3838
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597689.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.21.4e-1317941098
                    HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                     +k+  l +p  f+ ++ ++ + +++  +  + +++W v++  ++++    l++GW++F+++++L+ gD++vF ++g++ef   v++f 
  XP_009597689.1 17 GFKN-GLKIPLGFL-KYRKD-HDHIEHAILRRGSKKWLVNV--NGRR----LEEGWEKFAEEHNLQLGDILVFGHEGDMEF--EVSIFH 94
                    4555.5********.88555.46788999999*********..8888....************************999999..888875 PP
2B354.22.7e-17179265596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     +++++  +++++ +pk fa+e+g+++++  t++++d + rsWe++l    + +++++++ W++F+ an LkegD v+F+  + +++++++k+
  XP_009597689.1 179 TVKPYWISKCLMHVPKLFARENGLSNRK-CTIVIRD-EQRSWEFRL--YSSARSIFIGGEWRKFCAANFLKEGDHVMFEIFS-KGEKPTLKF 265
                     56788999**************999765.5999999.779******..999999*************************655.666677765 PP
3B352.58.9e-17349429587
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                     +++++ l+ g l +pk+fa+++g+k + +  l+++de+ +sW+++l  + ++ ++++++G ++F  +n LkegD ++F+ + +
  XP_009597689.1 349 TIRPYCLTYGFLNIPKHFASANGLKANMKCSLIIRDERQKSWTLRL--SVCKTQVYIGDGLRKFIADNCLKEGDRIMFETVTN 429
                     5678999999************999999999***************..999999*************************6653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.4E-19398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-19498IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.758796IPR003340B3 DNA binding domain
CDDcd100174.98E-13893No hitNo description
SMARTSM010193.4E-151096IPR003340B3 DNA binding domain
PfamPF023623.8E-101794IPR003340B3 DNA binding domain
SuperFamilySSF1019369.22E-17173265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-16173259IPR015300DNA-binding pseudobarrel domain
CDDcd100171.35E-14174267No hitNo description
PROSITE profilePS5086311.984175271IPR003340B3 DNA binding domain
SMARTSM010192.0E-14175269IPR003340B3 DNA binding domain
PfamPF023622.7E-15178266IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-17343437IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-18343437IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.785345440IPR003340B3 DNA binding domain
SMARTSM010195.1E-16345440IPR003340B3 DNA binding domain
PfamPF023622.0E-14349431IPR003340B3 DNA binding domain
CDDcd100179.03E-12358425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MKIPPKKPHF FKPIMPGFKN GLKIPLGFLK YRKDHDHIEH AILRRGSKKW LVNVNGRRLE  60
EGWEKFAEEH NLQLGDILVF GHEGDMEFEV SIFHSNQCER EYEEEQKVHN VEETSKKFEF  120
KDLRGNASLL PEGKKTNLHA KSVSTEEKTN PNIMSSHEVF PDVEATKDMP LGHPHLITTV  180
KPYWISKCLM HVPKLFAREN GLSNRKCTIV IRDEQRSWEF RLYSSARSIF IGGEWRKFCA  240
ANFLKEGDHV MFEIFSKGEK PTLKFYNLRG DASLQPEGKK TNLDTERVST QDLRGNASLQ  300
PEGKTTNLHA KRVSSEEKPS PSIKSSNKAS TDAKVAAHEP YGHSNFVCTI RPYCLTYGFL  360
NIPKHFASAN GLKANMKCSL IIRDERQKSW TLRLSVCKTQ VYIGDGLRKF IADNCLKEGD  420
RIMFETVTNG ETPIWKFQVV TSGKDSDEGS IKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016469435.10.0PREDICTED: B3 domain-containing protein REM5-like
TrEMBLA0A1S3ZYC40.0A0A1S3ZYC4_TOBAC; B3 domain-containing protein REM5-like
STRINGXP_009597689.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.14e-33B3 family protein