PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009597618.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 554aa    MW: 63822.6 Da    PI: 9.9609
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009597618.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.24e-151694999
                    HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      +k++ l +pk f+ ++ +g ++e     +  + +++W vkl  ++++    l++GW++F++++gL+ gD ++F+++g++ef   v++f++
  XP_009597618.1 16 PGFKHA-LKIPKGFL-KYlKGHEHE---HAVLRRGSKKWLVKL--NGQR----LEEGWEKFAEEHGLQLGDLLIFRHEGEMEF--EVTIFDS 94
                    456666.********.564666444...56777899*******..8887....***********************9999999..9999986 PP
2B343.55.9e-14140221589
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     +++s+ ++++ ++lp kf++++g+k+++   l+++ e+ rsW++kl    + +++++++ W eF +an++k+gD ++F+++ + e
  XP_009597618.1 140 TVRSYCFSKSYFRLPGKFTKANGLKNKK-CGLIIRGERQRSWNLKL--YTSYSQVYIGGKWGEFRDANDIKVGDRIMFEVVANGE 221
                     578999****************777544.47999************..66667889***********************887533 PP
3B3551.4e-17286372596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++++l+++ l++p +fa++hg+  ++  t++++d + rsW+++l    ++  +++++GW++F+ an LkegD v+F  +  +++++ +k+
  XP_009597618.1 286 TMKPYYLSKHFLRVPSPFARQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGTVTYIGGGWRDFCIANCLKEGDRVMFGIVA-NGEKPILKF 372
                     57899999999***********999766.5999999.779******..888888*************************876.555566665 PP
4B354.22.7e-17431517596
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                     ++++++l+++ l++p +fa++hg+  ++  t++++d + rsW+++l    +++ +++++GW+eF+ an LkegD v+F  +  +++++ +k+
  XP_009597618.1 431 TMKPYYLSKRFLRVPCPFAQQHGLRDRK-CTIMIRD-EQRSWTFTL--YSCGRFTYIGGGWREFCVANCLKEGDRVMFGIVA-NGEKPILKF 517
                     56889999999***********999765.5999999.779******..999999*************************876.555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-21497IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-20597IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.449795IPR003340B3 DNA binding domain
CDDcd100171.23E-15893No hitNo description
SMARTSM010193.0E-171095IPR003340B3 DNA binding domain
PfamPF023622.6E-111994IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-13134227IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.771136230IPR003340B3 DNA binding domain
SMARTSM010199.2E-9136233IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-14136227IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-12140222IPR003340B3 DNA binding domain
CDDcd100172.67E-10142215No hitNo description
SuperFamilySSF1019361.41E-19278372IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-19279372IPR015300DNA-binding pseudobarrel domain
CDDcd100179.03E-15281374No hitNo description
PROSITE profilePS5086311.392282375IPR003340B3 DNA binding domain
SMARTSM010197.0E-15283376IPR003340B3 DNA binding domain
PfamPF023626.5E-15286373IPR003340B3 DNA binding domain
SuperFamilySSF1019361.47E-19423517IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-19424517IPR015300DNA-binding pseudobarrel domain
CDDcd100175.01E-14426519No hitNo description
PROSITE profilePS5086311.068427520IPR003340B3 DNA binding domain
SMARTSM010191.1E-13427521IPR003340B3 DNA binding domain
PfamPF023621.1E-14431518IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MKVRPAKPHF FKPILPGFKH ALKIPKGFLK YLKGHEHEHA VLRRGSKKWL VKLNGQRLEE  60
GWEKFAEEHG LQLGDLLIFR HEGEMEFEVT IFDSSHCDRE YAEYLQDEED AHTVKDPSKK  120
FEIKEAAPQN PIGQSHVVCT VRSYCFSKSY FRLPGKFTKA NGLKNKKCGL IIRGERQRSW  180
NLKLYTSYSQ VYIGGKWGEF RDANDIKVGD RIMFEVVANG ERPIWKFHHL RKNASLQPEG  240
MKTNSDTERV STPEKPKSNI ISSREAVPNV EAAKDMHLGH PHFICTMKPY YLSKHFLRVP  300
SPFARQHGLR DRKCTIMIRD EQRSWTFTLY SCGTVTYIGG GWRDFCIANC LKEGDRVMFG  360
IVANGEKPIL KFHDLRENAL LRPEGKKTNS DTERVSTQEK PKSNVISSRE AVPNVEAAKD  420
MHLGHPHFIC TMKPYYLSKR FLRVPCPFAQ QHGLRDRKCT IMIRDEQRSW TFTLYSCGRF  480
TYIGGGWREF CVANCLKEGD RVMFGIVANG EKPILKFHDL RGNASLQPEG KKIKLDAKSV  540
STQGITDLKI RPQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018625364.10.0PREDICTED: B3 domain-containing protein REM14-like
TrEMBLA0A1S3YP650.0A0A1S3YP65_TOBAC; B3 domain-containing protein REM14-like isoform X1
TrEMBLA0A1U7X3S60.0A0A1U7X3S6_NICSY; B3 domain-containing protein REM14-like isoform X1
STRINGXP_009597618.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.13e-55B3 family protein