PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009596243.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 326aa MW: 34993.5 Da PI: 7.469

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009596243.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.8	3.9e-38	43	158	5	89
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 k++ +++hTkv+gR+RR+R++a+caar+F+L++eLG+++ ++tieWLlqqa+p+i+++tgt++++a+++ ++s +ss+ + s++ XP_009596243.1 43 KKPYKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSEGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplfih 137 7899**************************************************************99977777777777444444444455555 PP TCP 89 ....................k 89 + XP_009596243.1 138 ggattmlgfhhplsntgygqD 158 555555555555555555441 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	26.351	46	100	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.9E-37	47	193	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MEFREPNSKN QGGSTSHSDN QNDSNNNNSN DNNNNSISTK IVKKPYKDRH TKVDGRGRRI 60 RMPALCAARV FQLTKELGHK SEGETIEWLL QQAEPSIIAA TGTGTIPANF STLNVSLRSS 120 GTTISAPPSK SAPLFIHGGA TTMLGFHHPL SNTGYGQDPG ENYMKKRYRE DTSGATSLPS 180 ATKTERTGGQ AHEPDEESKP GSSHASSYIP APAMWAVAPA AGNVGNTFWM VPGTSSTMQR 240 IGGFELSGGG RFNPVQLGSM FLQQPQPVQQ LGLGVSETNL GMLASMNAYN SRGTGIDLGM 300 NLEQHHHQNQ QQGSESGDEN HKDSQS

Functional Description ? help Back to Top
Source	Description
UniProt	Can specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269\|PubMed:21297037}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009596243.1	0.0	PREDICTED: transcription factor TCP8-like
Swissprot	Q9C518	1e-67	TCP8_ARATH; Transcription factor TCP8
TrEMBL	A0A1S3ZLH0	0.0	A0A1S3ZLH0_TOBAC; transcription factor TCP8-like
STRING	XP_009596243.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-55	TCP family protein

Publications ? help Back to Top
Mazur MJ, et al. Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. Front Plant Sci, 2017. 8: p. 2043 [PMID:29250092]