PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_009595577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 302aa MW: 34116.9 Da PI: 6.0683 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.9 | 1.4e-30 | 77 | 135 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++++tY+ eHnh+ XP_009595577.1 77 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPNMLVVTYSCEHNHP 135 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-31 | 73 | 137 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-26 | 75 | 137 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-36 | 76 | 136 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.409 | 77 | 137 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.8E-26 | 78 | 135 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MDGRFNNIFV SHEQEDSENS PENSLDSPRS DMFNDNKMMT STSSPKRRRS IQKRVVSVPI 60 KEVEGTKMKG EISMPPSDSW AWRKYGQKPI KGSPYPRGYY RCSSSKGCPA RKQVERSRAD 120 PNMLVVTYSC EHNHPWPASR NNQHNQRTTT TSCINNAKTK TKTLASLTAT TTIITTTNIA 180 VSDFERKKDT SNFASQSEPN SDENFTNLGE SSLISCNEFG WFSDFECTST TMLESPILTE 240 VEVTDIDMSS TLTTMREEDD SLFADLGELP ECSRVFGRGM MERDEERRRH SLSLTSWCGT 300 LG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-22 | 66 | 137 | 3 | 79 | Disease resistance protein RRS1 |
5w3x_D | 7e-22 | 66 | 137 | 3 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ102364 | 0.0 | DQ102364.1 Capsicum annuum WRKY-A1244 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009595577.1 | 0.0 | PREDICTED: probable WRKY transcription factor 65 isoform X2 | ||||
Swissprot | Q9LP56 | 1e-73 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A1S4DDS7 | 0.0 | A0A1S4DDS7_TOBAC; probable WRKY transcription factor 65 isoform X2 | ||||
STRING | XP_009595576.1 | 0.0 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 2e-74 | WRKY DNA-binding protein 65 |
Publications ? help Back to Top | |||
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