PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009595185.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21255.7 Da    PI: 4.8161
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009595185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.41.6e-121660145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +rien   r++tfskRr g+ KKA+ L   C++++ + +fs+ g+
  XP_009595185.1 16 ERIENPEDRYTTFSKRRSGLYKKANNLVEECGVDIGIALFSPAGN 60
                    69****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-14867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.273868IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-17976IPR002100Transcription factor, MADS-box
CDDcd001201.77E-20967No hitNo description
PRINTSPR004041.3E-101030IPR002100Transcription factor, MADS-box
PfamPF003195.0E-181764IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-103045IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-104566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDKEKKTAGR QSIPMERIEN PEDRYTTFSK RRSGLYKKAN NLVEECGVDI GIALFSPAGN  60
PFSFFHPTPN LILDPVENPN IELSESTKLV AAYARNNVNQ TNSRINEIET IEEGVKSRML  120
LLEQLNKTRQ IDSYKCIDQF KADDIIKYEA WLQSVVFGLE NHLKQLGNGA SSSSEAPSDN  180
ADNSPSASNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009595185.11e-139PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A1S3Y5J91e-137A0A1S3Y5J9_TOBAC; agamous-like MADS-box protein AGL61
STRINGXP_009595185.11e-139(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04100.11e-22AGAMOUS-like 57