PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009593656.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 223aa MW: 25622 Da PI: 4.4266

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009593656.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.8	1e-34	11	111	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++r+kC ++C lapyfp++++++f nv +lFG++n +kll+++ ++++e+++++l++e++++ ++PvyG++g+ +kl+ ++e ++el+ XP_009593656.1 11 ACAACKHQRKKCDANCQLAPYFPSNRSEDFPNVYRLFGVNNTIKLLNSVADDQKEKTAETLIFEGKVWKENPVYGCLGIERKLRAEIEAYEKELE 105 7********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ XP_009593656.1 106 MVRKQI 111 *99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.594	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-32	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MNADMLMFVG ACAACKHQRK KCDANCQLAP YFPSNRSEDF PNVYRLFGVN NTIKLLNSVA 60 DDQKEKTAET LIFEGKVWKE NPVYGCLGIE RKLRAEIEAY EKELEMVRKQ ISFCKEMAIL 120 QMQRQQLEEQ LDRSSLALVS PFDVHYHDKK IEAIFMSDTK IFYGYKYDST LDEVANVECN 180 AIQDADFDHP AFVEPESGRV DEFKDCEIEA ISITGEEEIA DLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-21	12	111	12	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-21	12	111	12	111	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019250866.1	1e-152	PREDICTED: LOB domain-containing protein 22-like
TrEMBL	A0A1J6I4F4	1e-150	A0A1J6I4F4_NICAT; Lob domain-containing protein 27
STRING	XP_009593656.1	1e-166	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	4e-28	LOB domain-containing protein 27